Serialized Form
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Package ch.systemsx.cisd.openbis.plugin.screening.client.api.v1
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Class ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ExampleImageTransformerFactory extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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brightnessDelta
int brightnessDelta
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colorPattern
java.lang.String colorPattern
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Package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.AbstractFormatSelectionCriterion extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ColorDepthCriterion extends AbstractFormatSelectionCriterion implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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colorDepth
java.util.Set<java.lang.Integer> colorDepth
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetIdentifier extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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datasetCode
java.lang.String datasetCode
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datastoreServerUrl
java.lang.String datastoreServerUrl
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImageRepresentationFormats extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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dataset
IDatasetIdentifier dataset
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imageRepresentationFormats
java.util.ArrayList<ImageRepresentationFormat> imageRepresentationFormats
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetImagesReference extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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imageParameters
ImageDatasetParameters imageParameters
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetOverlayImagesReference extends DatasetImagesReference implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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analysisProcedureOrNull
java.lang.String analysisProcedureOrNull
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetReference extends DatasetIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
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Serialized Fields
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dataSetType
java.lang.String dataSetType
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experimentIdentifier
ExperimentIdentifier experimentIdentifier
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plate
PlateIdentifier plate
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plateGeometry
Geometry plateGeometry
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properties
java.util.Map<java.lang.String,java.lang.String> properties
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registrationDate
java.util.Date registrationDate
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ExperimentIdentifier extends PermanentIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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experimentCode
java.lang.String experimentCode
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projectCode
java.lang.String projectCode
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spaceCode
java.lang.String spaceCode
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ExperimentImageMetadata extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channels
java.util.List<ImageChannel> channels
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identifier
ExperimentIdentifier identifier
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originalImageSize
ImageSize originalImageSize
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plateGeometry
Geometry plateGeometry
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thumbnailImageSizes
java.util.List<ImageSize> thumbnailImageSizes
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tileGeometry
Geometry tileGeometry
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureInformation extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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code
java.lang.String code
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description
java.lang.String description
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label
java.lang.String label
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVector extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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values
double[] values
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vocabularyFeatureFlags
boolean[] vocabularyFeatureFlags
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vocabularyTerms
java.lang.String[] vocabularyTerms
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wellPosition
WellPosition wellPosition
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDataset extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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dataset
FeatureVectorDatasetReference dataset
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featureCodes
java.util.List<java.lang.String> featureCodes
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featureLabels
java.util.List<java.lang.String> featureLabels
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featureNames
java.util.List<java.lang.String> featureNames
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featureVectors
java.util.List<FeatureVector> featureVectors
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetReference extends DatasetReference implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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imageDatasetIdentifierOrNull
IImageDatasetIdentifier imageDatasetIdentifierOrNull
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorDatasetWellReference extends FeatureVectorDatasetReference implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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wellPosition
WellPosition wellPosition
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FeatureVectorWithDescription extends FeatureVector implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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datasetWellReference
FeatureVectorDatasetWellReference datasetWellReference
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featureNames
java.util.List<java.lang.String> featureNames
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.FileTypeCriterion extends AbstractFormatSelectionCriterion implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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fileTypes
java.util.Set<java.lang.String> fileTypes
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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height
int height
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width
int width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageChannel extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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code
java.lang.String code
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description
java.lang.String description
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label
java.lang.String label
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transformations
java.util.List<ImageTransformationInfo> transformations
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wavelength
java.lang.Integer wavelength
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageChannelStack extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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depthOrNull
java.lang.Float depthOrNull
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id
long id
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seriesNumberOrNull
java.lang.Integer seriesNumberOrNull
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tileCol
int tileCol
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tileRow
int tileRow
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timePointOrNull
java.lang.Float timePointOrNull
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetEnrichedReference extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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imageDataset
DatasetImagesReference imageDataset
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overlayDatasets
java.util.List<DatasetOverlayImagesReference> overlayDatasets
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetMetadata extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
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Serialized Fields
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channelCodes
java.util.List<java.lang.String> channelCodes
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channelLabels
java.util.List<java.lang.String> channelLabels
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channelNames
java.util.List<java.lang.String> channelNames
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channels
java.util.List<ImageChannel> channels
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channelsNumber
int channelsNumber
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height
int height
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imageDataset
IImageDatasetIdentifier imageDataset
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thumbnailHeight
int thumbnailHeight
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thumbnailWidth
int thumbnailWidth
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tilesCols
int tilesCols
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tilesNumber
int tilesNumber
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tilesRows
int tilesRows
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width
int width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetParameters extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channels
java.util.List<InternalImageChannel> channels
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colsNumOrNull
java.lang.Integer colsNumOrNull
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datasetCode
java.lang.String datasetCode
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isMultidimensional
boolean isMultidimensional
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mergedChannelTransformerFactorySignatureOrNull
java.lang.String mergedChannelTransformerFactorySignatureOrNull
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rowsNumOrNull
java.lang.Integer rowsNumOrNull
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tileColsNum
int tileColsNum
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tileRowsNum
int tileRowsNum
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageDatasetReference extends DatasetReference implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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parentImageDatasetReference
ImageDatasetReference parentImageDatasetReference
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageRepresentationFormat extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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colorDepth
java.lang.Integer colorDepth
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dataSetCode
java.lang.String dataSetCode
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fileType
java.lang.String fileType
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height
java.lang.Integer height
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id
long id
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original
boolean original
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transformations
java.util.List<ImageRepresentationFormat.ImageRepresentationTransformation> transformations
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width
java.lang.Integer width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageRepresentationFormat.ImageRepresentationTransformation extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channelCode
java.lang.String channelCode
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transformationCode
java.lang.String transformationCode
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transformationId
long transformationId
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageResolution extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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height
int height
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width
int width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageSize extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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height
int height
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width
int width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageTransformationInfo extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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code
java.lang.String code
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defaultTransformation
boolean defaultTransformation
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description
java.lang.String description
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label
java.lang.String label
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.InternalImageChannel extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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availableImageTransformations
java.util.List<InternalImageTransformationInfo> availableImageTransformations
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code
java.lang.String code
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description
java.lang.String description
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label
java.lang.String label
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wavelength
java.lang.Integer wavelength
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.InternalImageTransformationInfo extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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code
java.lang.String code
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description
java.lang.String description
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isDefault
boolean isDefault
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label
java.lang.String label
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transformationSignature
java.lang.String transformationSignature
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.LoadImageConfiguration extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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desiredImageFormatPng
boolean desiredImageFormatPng
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desiredImageSizeOrNull
ImageSize desiredImageSizeOrNull
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openBisImageTransformationApplied
boolean openBisImageTransformationApplied
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singleChannelImageTransformationCodeOrNull
java.lang.String singleChannelImageTransformationCodeOrNull
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.LogicalImageInfo extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channelStacks
java.util.List<ImageChannelStack> channelStacks
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imageDataset
ImageDatasetEnrichedReference imageDataset
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Material extends MaterialIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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materialProperties
java.util.Map<java.lang.String,Material> materialProperties
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properties
java.util.Map<java.lang.String,java.lang.String> properties
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialIdentifier extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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materialCode
java.lang.String materialCode
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materialTypeIdentifier
MaterialTypeIdentifier materialTypeIdentifier
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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materialTypeCode
java.lang.String materialTypeCode
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MicroscopyImageReference extends DatasetIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channel
java.lang.String channel
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tile
int tile
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.OriginalCriterion extends AbstractFormatSelectionCriterion implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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original
boolean original
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PermanentIdentifier extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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permId
java.lang.String permId
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate extends PlateIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialization Methods
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readObject
private void readObject(java.io.ObjectInputStream in) throws java.io.IOException, java.lang.ClassNotFoundException
- Throws:
java.io.IOException
java.lang.ClassNotFoundException
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Serialized Fields
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experimentCode
java.lang.String experimentCode
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experimentIdentifier
ExperimentIdentifier experimentIdentifier
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projectCode
java.lang.String projectCode
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier extends PermanentIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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plateCode
java.lang.String plateCode
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projectCodeOrNull
java.lang.String projectCodeOrNull
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spaceCodeOrNull
java.lang.String spaceCodeOrNull
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateImageReference extends DatasetIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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channelOrNull
java.lang.String channelOrNull
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tile
int tile
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wellPosition
WellPosition wellPosition
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateMetadata extends PlateIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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plateGeometry
Geometry plateGeometry
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properties
java.util.Map<java.lang.String,java.lang.String> properties
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wells
java.util.List<WellMetadata> wells
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellMaterialMapping extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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mapping
java.util.List<MaterialIdentifier>[] mapping
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plateGeometry
Geometry plateGeometry
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plateIdentifier
PlateIdentifier plateIdentifier
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellReferenceWithDatasets extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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experimentPlateIdentifier
Plate experimentPlateIdentifier
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featureVectorDatasetReferences
java.util.List<FeatureVectorDatasetReference> featureVectorDatasetReferences
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imageDatasetReferences
java.util.List<ImageDatasetReference> imageDatasetReferences
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wellPosition
WellPosition wellPosition
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.SizeCriterion extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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height
int height
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type
SizeCriterion.Type type
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width
int width
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellIdentifier extends PermanentIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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plateIdentifier
PlateIdentifier plateIdentifier
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wellPosition
WellPosition wellPosition
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellLocation extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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column
int column
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row
int row
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellMetadata extends WellIdentifier implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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code
java.lang.String code
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materialProperties
java.util.Map<java.lang.String,Material> materialProperties
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properties
java.util.Map<java.lang.String,java.lang.String> properties
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type
java.lang.String type
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.WellPosition extends java.lang.Object implements Serializable
- serialVersionUID:
- 1L
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Serialized Fields
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wellColumn
int wellColumn
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wellRow
int wellRow
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Package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.json
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Class ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.json.ScreeningObjectMapper extends com.fasterxml.jackson.databind.ObjectMapper implements Serializable
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