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A

addFlushable(Flushable) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Adds a Flushable to the set of flushables.
addHints(HDF5CompoundMemberMapping[], HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Adds the given hintsOrNull to all mapping.
addToCompressionBlackList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of files to store compressed in archive.
addToCompressionBlackList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of files to store compressed in archive.
addToCompressionWhiteList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of files to store compressed in archive.
addToCompressionWhiteList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of files to store compressed in archive.
addToDirBlackList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of directories to exclude from archiving.
addToDirBlackList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of directories to exclude from archiving.
addToDirWhiteList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of directories to include in archiving.
addToDirWhiteList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of directories to include in archiving.
addToFileBlackList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of files to exclude from archiving.
addToFileBlackList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the blacklist of files to exclude from archiving.
addToFileWhiteList(Pattern) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of files to include in archiving.
addToFileWhiteList(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Add the given pattern to the whitelist of files to include in archiving.
ALL - Static variable in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
all() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
archiveDirectory(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Add a new directory to the archive.
archiveDirectory(NewArchiveEntry.NewDirectoryArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Add a new directory to the archive.
ArchiveEntry - Class in ch.systemsx.cisd.hdf5.h5ar
An entry of an archive listing.
ArchiveEntryCompleteness - Enum in ch.systemsx.cisd.hdf5.h5ar
An enum to specify the completeness of an archive entry.
archiveFile(String, byte[]) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the data as file in the archive.
archiveFile(String, InputStream) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the input as file in the archive.
archiveFile(NewArchiveEntry.NewFileArchiveEntry, InputStream) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the input as file in the archive.
archiveFile(NewArchiveEntry.NewFileArchiveEntry, byte[]) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the data as file in the archive.
archiveFileAsIOutputStream(NewArchiveEntry.NewFileArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Return an IOutputStream that can be used to write the content of a file into the archive.
archiveFileAsOutputStream(NewArchiveEntry.NewFileArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Return an OutputStream that can be used to write the content of a file into the archive.
archiveFromFilesystem(File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, ArchivingStrategy) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, ArchivingStrategy, boolean, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, File, ArchivingStrategy) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(File, File, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(String, File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(String, File, ArchivingStrategy) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystem(String, File, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the path from the filesystem.
archiveFromFilesystemBelowDirectory(String, File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the content below directory from the filesystem.
archiveFromFilesystemBelowDirectory(String, File, ArchivingStrategy) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the content below directory from the filesystem.
archiveFromFilesystemBelowDirectory(String, File, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the content below directory from the filesystem.
archiveFromFilesystemBelowDirectory(String, File, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Archive the content below directory from the filesystem.
ArchiverException - Exception in ch.systemsx.cisd.hdf5.h5ar
Base class of exceptions from the archiver.
archiveSymlink(String, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Add a new symbolic link to the archive.
archiveSymlink(NewArchiveEntry.NewSymLinkArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Add a new symbolic link to the archive.
ArchivingException - Exception in ch.systemsx.cisd.hdf5.h5ar
Exception thrown when archiving a file / directory fails.
ArchivingException(String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ArchivingException
 
ArchivingException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ArchivingException
 
ArchivingException(File, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ArchivingException
 
ArchivingException(String, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ArchivingException
 
ArchivingException(String, String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ArchivingException
 
ArchivingStrategy - Class in ch.systemsx.cisd.hdf5.h5ar
A class that represents a strategy for excluding files from archiving / extracting and for compressing files in the archive.
ArchivingStrategy() - Constructor for class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
 
ArchivingStrategy(ArchivingStrategy) - Constructor for class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
 
ArchivingStrategy.CompressionStrategy - Enum in ch.systemsx.cisd.hdf5.h5ar
 
array() - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that reads the complete array.
asIInputStream(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an IInputStream.
asIInputStream(IHDF5Reader, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the reader as an IInputStream.
asInputStream(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an InputStream.
asInputStream(IHDF5Reader, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the reader as an InputStream.
asIOutputStream(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an IOutputStream.
asIOutputStream(File, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an IOutputStream.
asIOutputStream(IHDF5Writer, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an IOutputStream.
asIOutputStream(IHDF5Writer, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an IOutputStream.
asOutputStream(File, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an OutputStream.
asOutputStream(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an IOutputStream.
asOutputStream(IHDF5Writer, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an IOutputStream.
asOutputStream(IHDF5Writer, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an OutputStream.
asRandomAccessFile(File, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an HDF5DataSetRandomAccessFile in read/write mode.
asRandomAccessFile(IHDF5Writer, String, HDF5GenericStorageFeatures, int, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an HDF5DataSetRandomAccessFile.
asRandomAccessFile(IHDF5Writer, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the writer as an HDF5DataSetRandomAccessFile.
asRandomAccessFile(IHDF5Reader, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the reader as an HDF5DataSetRandomAccessFile.
asRandomAccessFileReadOnly(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an HDF5DataSetRandomAccessFile in read-only mode.
asRandomAccessFileReadWrite(File, String) - Static method in class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
Creates an adapter of the hdf5File as an HDF5DataSetRandomAccessFile in read/write mode.
available() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 

B

bind(int, long) - Method in class ch.systemsx.cisd.hdf5.IndexMap
Bind index to indexValue.
bind(int, int) - Method in class ch.systemsx.cisd.hdf5.IndexMap
Bind index to indexValue.
block(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParams
Sets an array block dimensions.
block(int...) - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that reads an array block.
blockIndex(long...) - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that writes a block with given blockIndex.
blockOffset(long...) - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that writes a block with given blockOffset.
bool() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for boolean values.
bool() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for boolean values.
build() - Static method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Starts building new list parameters.
build() - Static method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters
Starts building new verify parameters.
build() - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Returns a new storage feature builder.
build(HDF5AbstractStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Returns a new storage feature builder, initializing from template.
build() - Static method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Returns a new storage feature builder.
build(HDF5AbstractStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Returns a new storage feature builder, initializing from template.
build() - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Returns a new storage feature builder.
build(HDF5AbstractStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Returns a new storage feature builder, initializing from template.
BuildAndEnvironmentInfo - Class in ch.systemsx.cisd.hdf5
The build and environment information for JHDF5.

C

capacity() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
ch.systemsx.cisd.hdf5 - package ch.systemsx.cisd.hdf5
 
ch.systemsx.cisd.hdf5.exceptions - package ch.systemsx.cisd.hdf5.exceptions
 
ch.systemsx.cisd.hdf5.h5ar - package ch.systemsx.cisd.hdf5.h5ar
 
ch.systemsx.cisd.hdf5.io - package ch.systemsx.cisd.hdf5.io
 
CharacterEncoding - Enum in ch.systemsx.cisd.hdf5
An enum for character encodings of path names and strings in JHDF5.
checkMappingComplete() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Checks whether the mapping between the on-disk representation and the in-memory representation is complete.
checksumOK() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true if this the checksum of this archive entry has been verified successfully (or if no verification information for the checksum is available).
chunkedStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set a chunked layout for the dataset.
chunkedStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set a chunked layout for the dataset.
chunkedStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set a chunked layout for the dataset.
chunkSize(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
close() - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Closes this object and the file referenced by this object.
close() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSet
 
close() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetTemplate
 
close() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Closes this object and the file referenced by this object.
close() - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Closes this object and the file referenced by this object.
close() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
compactStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set a compact layout for the dataset.
compactStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set a compact layout for the dataset.
compactStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set a compact layout for the dataset.
compareTo(HDF5CompoundMemberInformation) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
 
compound() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for compounds.
compound() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full reader for compounds.
CompoundElement - Annotation Type in ch.systemsx.cisd.hdf5
A marker annotation for fields intended to be mapped to an HDF5 compound data type member.
CompoundType - Annotation Type in ch.systemsx.cisd.hdf5
A marker annotation for classes intended to be mapped to an HDF5 compound data type.
compress() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
compress(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
compress(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Compresses the dataset with default deflation level, if compress==true, do not compress if compress==false.
compress() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Compress the dataset with default deflation level.
compress(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Compresses the dataset with default deflation level, if compress==true, do not compress if compress==false.
compress() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Compress the dataset with default deflation level.
compress(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Compresses the dataset with default deflation level, if compress==true, do not compress if compress==false.
compress() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Compress the dataset with default deflation level.
compressAll() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Store all files compressed in archive.
compressAll(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Sets, whether all files should be stored compressed in archive (true) or not ( false).
computeIndex(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
computeIndex(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
computeIndex(int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
computeReverseIndex(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
configure(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens a configurator for an HDF5 file for writing and reading.
configure(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens a configurator for an HDF5 file named filePath for writing and reading.
configure(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Opens a configurator for an HDF5 file for writing and reading.
configureForReading(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens a configurator for an HDF5 file for reading.
configureForReading(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens a configurator for an HDF5 file named filePath for reading.
configureForReading(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Opens a configurator for an HDF5 file for reading.
constructCompoundTypeName(Collection<String>, boolean) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Infers a name for a compound type from the given memberNames by concatenating them.
contiguousStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set a contiguous layout for the dataset.
contiguousStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set a contiguous layout for the dataset.
contiguousStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set a contiguous layout for the dataset.
convert(long, HDF5TimeUnit) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time duration in the given unit to this unit.
convert(HDF5TimeDurationArray) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time durations in the given time unit to this unit.
convert(HDF5TimeDurationMDArray) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time durations in the given time unit to this unit.
convert(long[], HDF5TimeUnit) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time durations in the given time unit to this unit.
convert(HDF5TimeDuration) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time duration in the given unit to this unit.
convert(HDF5TimeDuration[]) - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Convert the given time durations to this unit.
copy(String, IHDF5Writer, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Copies the sourceObject to the destinationObject of the HDF5 file represented by the destinationWriter.
copy(String, IHDF5Writer) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Copies the sourceObject to the root group of the HDF5 file represented by the destinationWriter.
copyAll(IHDF5Writer) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Copies all objects of the file represented by this reader to the root group of the HDF5 file represented by the destinationWriter.
create(Class<?>, String, HDF5CompoundMemberMapping...) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Creates the compound member information for the given compoundClass and members.
create(HDF5TimeUnit, long...) - Static method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Creates a HDF5TimeDurationArray from the array of given durationValues with the given timeUnit.
create(HDF5TimeDuration...) - Static method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Creates a HDF5TimeDurationArray from the given timeDurations.
createArray(String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createArray(String, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createArray(String, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createArray(String, long, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createArray(String, String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
createArray(String, String, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
createArray(String, String, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
createArray(String, String, long, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
createArray(String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createArray(String, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createArray(String, int, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createArray(String, long, int, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createArray(String, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArray(String, int, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArray(String, int, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArray(String, int, long, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArray(String, int, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createArray(String, long, int, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createArray(String, int, HDF5TimeUnit, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createArray(String, long, int, HDF5TimeUnit, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1).
createArray(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1).
createArray(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1).
createArray(String, HDF5CompoundType<T>, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank 1) of compound values.
createArray(String, HDF5CompoundType<T>, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank 1) of compound values.
createArray(String, HDF5CompoundType<T>, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank 1) of compound values.
createArray(String, HDF5CompoundType<T>, long, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank 1) of compound values.
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a time stamp array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a time stamp array (of rank 1).
createArray(String, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a time stamp array (of rank 1).
createArray(String, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a time stamp array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1).
createArray(String, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1).
createArray(String, long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1).
createArray(String, HDF5EnumerationType, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates am enum array (of rank 1).
createArray(String, HDF5EnumerationType, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates am enum array (of rank 1).
createArray(String, HDF5EnumerationType, long, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates am enum array (of rank 1).
createArray(String, HDF5EnumerationType, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates am enum array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1).
createArray(String, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1).
createArray(String, long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1).
createArray(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1).
createArray(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1).
createArray(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1).
createArray(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1).
createArray(String, String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Creates an opaque data set that will be represented as a byte array (of rank 1).
createArray(String, String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Creates an opaque data set that will be represented as a byte array (of rank 1).
createArray(String, String, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Creates an opaque data set that will be represented as a byte array (of rank 1).
createArray(String, String, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Creates an opaque data set that will be represented as a byte array (of rank 1).
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates an array (of rank 1) of object references.
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates an array (of rank 1) of object references.
createArray(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates an array (of rank 1) of object references.
createArray(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates an array (of rank 1) of object references.
createArray(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1).
createArray(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1).
createArray(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1).
createArray(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1).
createArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1).
createArray(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank 1) for Strings of length maxLength.
createArray(String, int, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank 1) for Strings of length maxLength.
createArray(String, int, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank 1) for Strings of length maxLength.
createArray(String, int, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank 1) for Strings of length maxLength.
createArray(String, int, HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a time duration array (of rank 1).
createArray(String, long, int, HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a time duration array (of rank 1).
createArray(String, long, int, HDF5TimeUnit, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a time duration array (of rank 1).
createArray(String, int, HDF5TimeUnit, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a time duration array (of rank 1).
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1) and opens it for reading and writing.
createArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array (of rank 1) and opens it for reading and writing.
createArrayTemplate(long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte array template (of rank 1) which can be used in IHDF5ByteWriter.writeArray(String, byte[], HDF5DataSetTemplate) to create data sets.
createArrayTemplate(long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double array template (of rank 1) which can be used in IHDF5DoubleWriter.writeArray(String, double[], HDF5DataSetTemplate) to create data sets.
createArrayTemplate(long, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float array template (of rank 1) which can be used in IHDF5FloatWriter.writeArray(String, float[], HDF5DataSetTemplate) to create data sets.
createArrayTemplate(long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int array template (of rank 1) which can be used in IHDF5IntWriter.writeArray(String, int[], HDF5DataSetTemplate) to create data sets.
createArrayTemplate(long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long array template (of rank 1) which can be used in IHDF5LongWriter.writeArray(String, long[], HDF5DataSetTemplate) to create data sets.
createArrayTemplate(long, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short array template (of rank 1) which can be used in IHDF5ShortWriter.writeArray(String, short[], HDF5DataSetTemplate) to create data sets.
createArrayVL(String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArrayVL(String, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArrayVL(String, long, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArrayVL(String, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createArrayVL(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String[] where each String of the array has a variable maximal length.
createArrayVL(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String[] where each String of the array has a variable maximal length.
createArrayVL(String, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String[] where each String of the array has a variable maximal length.
createArrayVL(String, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String[] where each String of the array has a variable maximal length.
createBitField(String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitField(String, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitField(String, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitField(String, long, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitField(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates a bit field (of rank 1).
createBitField(String, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates a bit field (of rank 1).
createBitField(String, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates a bit field array (of rank 1).
createBitField(String, long, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates a bit field (of rank 1).
createBitFieldArray(String, int, long, long, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitFieldArray(String, int, long, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitFieldArray(String, int, long, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitFieldArray(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
createBitFieldArray(String, int, long, long, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates an array of bit fields (of rank 1) (which can be considered the equivalent to a boolean array of rank 2).
createBitFieldArray(String, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates an array of bit fields (of rank 1) (which can be considered the equivalent to a boolean array of rank 2).
createBitFieldArray(String, int, long, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates an empty array of bit fields (of rank 1) (which can be considered the equivalent to a boolean array of rank 2).
createBitFieldArray(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Creates an empty array of bit fields (of rank 1) (which can be considered the equivalent to a boolean array of rank 2).
createDeflateAndFloatScaling(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the default deflation level and float scaling with the given scalingFactor.
createDeflateAndFloatScaling(int, int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the given deflateLevel and float scaling with the given scalingFactor.
createDeflateAndFloatScalingKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the default deflation level and float scaling with the given scalingFactor.
createDeflateAndFloatScalingKeep(int, int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the given deflateLevel and float scaling with the given scalingFactor.
createDeflateAndIntegerScaling(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the default deflation level and integer scaling with the given scalingFactor.
createDeflateAndIntegerScaling(int, byte) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflateLevel and integer scaling with the given scalingFactor.
createDeflateAndIntegerScaling(int, byte, boolean) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflateLevel and integer scaling with the given scalingFactor.
createDeflateAndIntegerScalingKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the default deflation level and integer scaling with the given scalingFactor.
createDeflateAndIntegerScalingKeep(int, byte) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflateLevel and integer scaling with the given scalingFactor.
createDeflateAndIntegerScalingUnsigned(int, byte) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflateLevel and integer scaling with the given scalingFactor.
createDeflateAndIntegerScalingUnsigned(int, byte, boolean) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflateLevel and integer scaling with the given scalingFactor.
createDeflation(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the given deflationLevel.
createDeflation(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Creates a HDF5GenericStorageFeatures object that represents deflation with the given deflationLevel.
createDeflation(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationDelete(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationDelete(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Creates a HDF5GenericStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationUnsigned(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel.
createDeflationUnsignedDelete(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel for unsigned integers.
createDeflationUnsignedKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents deflation with the given deflationLevel for unsigned integers.
createExternalLink(String, String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates an external link, that is a link to a data set in another HDF5 file, the target .
createFloatScaling(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents float scaling with the given scalingFactor.
createFloatScalingKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Creates a HDF5FloatStorageFeatures object that represents float scaling with the given scalingFactor.
createFromGeneric(HDF5GenericStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Create a corresponding HDF5FloatStorageFeatures for the given HDF5GenericStorageFeatures.
createFromGeneric(HDF5GenericStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Create a corresponding HDF5IntStorageFeatures for the given HDF5GenericStorageFeatures.
createGroup(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates a group with path objectPath in the HDF5 file.
createGroup(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates a group with path objectPath in the HDF5 file, giving the library a hint about the size (sizeHint).
createGroup(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates a group with path objectPath in the HDF5 file, giving the library hints about when to switch between compact and dense.
createHardLink(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates a hard link.
createIntegerScaling(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents integer scaling with the given scalingFactor.
createIntegerScalingKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents integer scaling with the given scalingFactor.
createIntegerScalingUnsigned(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents integer scaling with the given scalingFactor.
createIntegerScalingUnsignedKeep(int) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Creates a HDF5IntStorageFeatures object that represents integer scaling with the given scalingFactor.
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte matrix (array of rank 2).
createMatrix(String, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a byte matrix (array of rank 2).
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double matrix (array of rank 2).
createMatrix(String, int, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a double matrix (array of rank 2).
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float matrix (array of rank 2).
createMatrix(String, int, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a float matrix (array of rank 2).
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int matrix (array of rank 2).
createMatrix(String, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a int matrix (array of rank 2).
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long matrix (array of rank 2).
createMatrix(String, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a long matrix (array of rank 2).
createMatrix(String, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short matrix (array of rank 2).
createMatrix(String, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short matrix (array of rank 2).
createMatrix(String, long, long, int, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short matrix (array of rank 2).
createMatrix(String, long, long, int, int, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a short matrix (array of rank 2).
createMDArray(String, int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createMDArray(String, long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
createMDArray(String, int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createMDArray(String, long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
createMDArray(String, int, int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArray(String, int, long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArray(String, int, int[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArray(String, int, long[], int[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArray(String, int[], HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createMDArray(String, long[], int[], HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createMDArray(String, int[], HDF5TimeUnit, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createMDArray(String, long[], int[], HDF5TimeUnit, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArray(String, HDF5CompoundType<T>, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank N) of compound values.
createMDArray(String, HDF5CompoundType<T>, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank N) of compound values.
createMDArray(String, HDF5CompoundType<T>, long[], int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank N) of compound values.
createMDArray(String, HDF5CompoundType<T>, int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Creates an array (of rank N) of compound values.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a multi-dimensional array of time stamps / dates.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a multi-dimensional array of time stamps / dates.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a multi-dimensional array of time stamps / dates.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Creates a multi-dimensional array of time stamps / dates.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArray(String, int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArray(String, long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArray(String, HDF5EnumerationType, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates an array (of rank N) of Enum values.
createMDArray(String, HDF5EnumerationType, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates an array (of rank N) of Enum values.
createMDArray(String, HDF5EnumerationType, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates an array (of rank N) of Enum values.
createMDArray(String, HDF5EnumerationType, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Creates an array (of rank N) of Enum values.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArray(String, int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArray(String, long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates a multi-dimensional array of object references.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates a multi-dimensional array of object references.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates a multi-dimensional array of object references.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Creates a multi-dimensional array of object references.
createMDArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArray(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArray(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArray(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArray(String, int, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank N) for Strings of length maxLength.
createMDArray(String, int, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank N) for Strings of length maxLength.
createMDArray(String, int, int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank N) for Strings of length maxLength.
createMDArray(String, int, long[], int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a String array (of rank N) for Strings of length maxLength.
createMDArray(String, int[], HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a multi-dimensional array of time durations.
createMDArray(String, long[], int[], HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a multi-dimensional array of time durations.
createMDArray(String, int[], HDF5TimeUnit, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a multi-dimensional array of time durations.
createMDArray(String, long[], int[], HDF5TimeUnit, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Creates a multi-dimensional array of time durations.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array and opens it for reading and writing.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array and opens it for reading and writing.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array and opens it for reading and writing.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array and opens it for reading and writing.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array and opens it for reading and writing.
createMDArrayAndOpen(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array and opens it for reading and writing.
createMDArrayAndOpen(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array and opens it for reading and writing.
createMDArrayAndOpen(String, long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array.
createMDArrayAndOpen(String, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array and opens it for reading and writing.
createMDArrayTemplate(long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Creates a multi-dimensional byte array template which can be used e.g.
createMDArrayTemplate(long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Creates a multi-dimensional double array template which can be used e.g.
createMDArrayTemplate(long[], int[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Creates a multi-dimensional float array template which can be used e.g.
createMDArrayTemplate(long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Creates a multi-dimensional int array template which can be used e.g.
createMDArrayTemplate(long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Creates a multi-dimensional long array template which can be used e.g.
createMDArrayTemplate(long[], int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Creates a multi-dimensional short array template which can be used e.g.
createMDArrayVL(String, int[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArrayVL(String, int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArrayVL(String, long[], int[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArrayVL(String, long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
createMDArrayVL(String, int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a multi-dimensional String array where each String of the array has a variable maximal length.
createMDArrayVL(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a multi-dimensional String array where each String of the array has a variable maximal length.
createMDArrayVL(String, long[], int[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a multi-dimensional String array where each String of the array has a variable maximal length.
createMDArrayVL(String, long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Creates a multi-dimensional String array where each String of the array has a variable maximal length.
createOrUpdateExternalLink(String, String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates or updates an external link, that is a link to a data set in another HDF5 file, the target .
createOrUpdateSoftLink(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates or updates a soft link.
createSoftLink(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Creates a soft link.
createUnsignedFromGeneric(HDF5GenericStorageFeatures) - Static method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Create a corresponding HDF5IntStorageFeatures for the given HDF5GenericStorageFeatures.

D

datasetReplacementEnforceKeepExisting() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING .
datasetReplacementEnforceKeepExisting() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING .
datasetReplacementEnforceKeepExisting() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_KEEP_EXISTING .
datasetReplacementEnforceReplaceWithNew() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW .
datasetReplacementEnforceReplaceWithNew() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW .
datasetReplacementEnforceReplaceWithNew() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.ENFORCE_REPLACE_WITH_NEW .
datasetReplacementPolicy(HDF5AbstractStorageFeatures.DataSetReplacementPolicy) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set the dataset replacement policy for existing datasets.
datasetReplacementPolicy(HDF5AbstractStorageFeatures.DataSetReplacementPolicy) - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set the dataset replacement policy for existing datasets.
datasetReplacementPolicy(HDF5AbstractStorageFeatures.DataSetReplacementPolicy) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set the dataset replacement policy for existing datasets.
datasetReplacementUseWriterDefault() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.USE_WRITER_DEFAULT .
datasetReplacementUseWriterDefault() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.USE_WRITER_DEFAULT .
datasetReplacementUseWriterDefault() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set the dataset replacement policy for existing datasets to HDF5AbstractStorageFeatures.DataSetReplacementPolicy.USE_WRITER_DEFAULT .
decNumberOfHyperRows(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
DEFAULT - Static variable in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
The default strategy: include everything, compress all files except those known to be already compressed.
DEFAULT - Static variable in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
The default list parameters: recursive does not test the integrity of the archive does not suppress directory entries exclude the top-level directory reads symbolic link targets does not resolve symbolic links does not follow symbolic links
DEFAULT - Static variable in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters
 
DEFAULT - Static variable in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
DEFAULT_NO_COMPRESSION - Static variable in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
The default strategy without compression: include everything, compress nothing.
DEFAULT_VISITOR - Static variable in interface ch.systemsx.cisd.hdf5.h5ar.IArchiveEntryVisitor
 
DEFAULT_WITH_COMPRESSION - Static variable in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
An alias for the default strategy (kept for backward compatibility).
defaultStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Let a heuristic choose the right layout for the dataset.
defaultStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Let a heuristic choose the right layout for the dataset.
defaultStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Let a heuristic choose the right layout for the dataset.
deflateLevel(byte) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Compresses this dataset with the given deflateLevel.
deflateLevel(byte) - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Compresses this dataset with the given deflateLevel.
deflateLevel(byte) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Compresses this dataset with the given deflateLevel.
delete(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Deletes a path from the archive.
delete(List<String>) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Deletes a list of paths from the archive.
delete(List<String>, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Deletes a list of paths from the archive.
delete(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Removes an object from the file.
delete(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Removes an object from the file.
deleteAttribute(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Deletes an attribute.
DeleteFromArchiveException - Exception in ch.systemsx.cisd.hdf5.h5ar
Exception thrown when deleting a file / directory in an archive fails.
DeleteFromArchiveException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.DeleteFromArchiveException
 
DeleteFromArchiveException(File, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.DeleteFromArchiveException
 
deleteTypeVariant(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Deletes the typeVariant from objectPath.
deleteTypeVariant(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Deletes the typeVariant from attributeName of objectPath.
describeLink() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a (verbose) string description of this entry, including the (brief) verification status, if available.
describeLink(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string description of this entry, including the (brief) verification status, if available.
describeLink(boolean, boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string description of this entry, including the (brief) verification status, if available.
describeLink(boolean, boolean, boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string description of this entry.
dimensions(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the dimensions of the member type to use for the mapping.
dimensions(int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the dimensions of the member type to use for the mapping.
dimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the dimensions of this enumeration array.
dimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the number of elements.
directory(String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
directory(String, String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
doCompress(String) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
 
dontUseExtendableDataTypes() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Use data types which can not be extended later on.
duration() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for time durations.
duration() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for time durations.

E

enumeration() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for enumerations.
enumeration() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for enumerations.
EnumerationType - Class in ch.systemsx.cisd.hdf5
An enumeration type, consisting of name and the list of names of the enumeration terms.
EnumerationType(String, String[]) - Constructor for class ch.systemsx.cisd.hdf5.EnumerationType
 
EnumerationType(Class<? extends Enum<?>>) - Constructor for class ch.systemsx.cisd.hdf5.EnumerationType
 
EnumerationType(String, Class<? extends Enum<?>>) - Constructor for class ch.systemsx.cisd.hdf5.EnumerationType
 
enumReturnType(HDF5CompoundMappingHints.EnumReturnType) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Sets the return type for enums .
enumType(HDF5EnumerationType) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the enumeration type to use for the mapping.
enumTypeMapping(String, HDF5EnumerationType) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Adds an enum type mapping to this hints object.
enumTypeMapping(Map<String, HDF5EnumerationType>) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Replaces the enum type mapping of this hints object.
enumTypeName(String) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the name to be used for the comitted HDF5 datatype (for Java enum types only, overriding the simple class name which is used by default as the type name.
equals(Object) - Method in class ch.systemsx.cisd.hdf5.EnumerationType
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5DataSet
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetTemplate
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
 
equals(Object) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
exists(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns true, if an entry path exists in the archive.
exists(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns false, if the objectTypeOrNull is equal to HDF5ObjectType.NONEXISTENT and true otherwise.
exists(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true, if objectPath exists and false otherwise.
exists(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true, if objectPath exists and false otherwise.
exists(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Returns true, if objectPath exists and false otherwise.
extractFile(String, OutputStream) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractFile(String, OutputStream) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extract the content of a file in the archive to an OutputStream.
extractFileAsByteArray(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extract the content of a file in the archive to a byte array.
extractFileAsIInputStream(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extract the content of a file in the archive as an IInputStream.
extractFileAsInputStream(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extract the content of a file in the archive as an InputStream.
extractToFilesystem(File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystem(File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystem(File, String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystem(File, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystem(File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts the complete archive to the file system.
extractToFilesystem(File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts a path from the archive to the file system.
extractToFilesystem(File, String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts a path from the archive to the file system.
extractToFilesystem(File, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts a path from the archive to the file system.
extractToFilesystemBelowDirectory(File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystemBelowDirectory(File, String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystemBelowDirectory(File, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystemBelowDirectory(File, String, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
extractToFilesystemBelowDirectory(File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts all paths below a given directory path from the archive to the file system.
extractToFilesystemBelowDirectory(File, String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts all paths below a given directory path from the archive to the file system.
extractToFilesystemBelowDirectory(File, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts all paths below a given directory path from the archive to the file system.
extractToFilesystemBelowDirectory(File, String, String, ArchivingStrategy, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Extracts a path from the archive below a given directory path to the file system.

F

features() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Returns the storage features corresponding to this builder's values.
features() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Returns the storage features corresponding to this builder's values.
features() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Returns the storage features corresponding to this builder's values.
fieldName(String) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the field name in the Java class to use for the mapping, overriding the member name which is used by default to find the field.
file(String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
file(String, String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
file() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the handler for file-level information and status.
file() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the handler for file-level information and status.
fileFormat(IHDF5WriterConfigurator.FileFormatVersionBounds) - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Sets the file format compatibility for the writer.
float32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for float / float32.
float32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for float / float32.
float64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for long / float64.
float64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for long / float64.
FLOAT_CHUNKED - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a chunked storage layout.
FLOAT_CHUNKED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a chunked storage layout.
FLOAT_CHUNKED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a chunked storage layout.
FLOAT_COMPACT - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a compact storage layout.
FLOAT_COMPACT_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a compact storage layout.
FLOAT_COMPACT_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a compact storage layout.
FLOAT_CONTIGUOUS - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a contiguous storage layout.
FLOAT_CONTIGUOUS_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a contiguous storage layout.
FLOAT_CONTIGUOUS_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents a contiguous storage layout.
FLOAT_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
FLOAT_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
FLOAT_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
FLOAT_DEFLATE_MAX - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
FLOAT_DEFLATE_MAX_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
FLOAT_DEFLATE_MAX_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
FLOAT_NO_COMPRESSION - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'no compression', use default storage layout.
FLOAT_NO_COMPRESSION_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'no compression', use default storage layout.
FLOAT_NO_COMPRESSION_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'no compression', use default storage layout.
FLOAT_SCALING1 - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values.
FLOAT_SCALING1_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values combined with deflation using the default deflation level.
FLOAT_SCALING1_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values combined with deflation using the default deflation level.
FLOAT_SCALING1_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values combined with deflation using the default deflation level.
FLOAT_SCALING1_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values.
FLOAT_SCALING1_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 1 for float values.
FLOAT_SCALING2 - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values.
FLOAT_SCALING2_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values combined with deflation using the default deflation level.
FLOAT_SCALING2_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values combined with deflation using the default deflation level.
FLOAT_SCALING2_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values combined with deflation using the default deflation level.
FLOAT_SCALING2_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values.
FLOAT_SCALING2_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 2 for float values.
FLOAT_SCALING3 - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values.
FLOAT_SCALING3_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values combined with deflation using the default deflation level.
FLOAT_SCALING3_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values combined with deflation using the default deflation level.
FLOAT_SCALING3_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values combined with deflation using the default deflation level.
FLOAT_SCALING3_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values.
FLOAT_SCALING3_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents scaling with scaling factor 3 for float values.
FLOAT_SHUFFLE_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures
Represents 'standard compression' with a pre-filter shuffle, that is deflation with the default deflation level.
flush() - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
Flush the underlying HDF5 writer.
flush() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Flushes the cache to disk (without discarding it).
flush() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
flushSyncBlocking() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Flushes the cache to disk (without discarding it) and synchronizes the file with the underlying storage using a method like fsync(2), regardless of what IHDF5WriterConfigurator.SyncMode has been set for this file.
followSymbolicLinks() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Traverse a directory that was resolved from a symbolic link.
followSymbolicLinks(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If followSymbolicLinks is set to true, traverse a directory that was resolved from a symbolic link, if it is false, do not traverse a directory when it was resolved from a symbolic link.

G

garbageCollect() - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
H5garbage_collect walks through all the garbage collection routines of the library, freeing any unused memory.
generateMDCImage() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Enables generation of a metadata cache image.
GENERIC_CHUNKED - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a chunked storage layout.
GENERIC_CHUNKED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a chunked storage layout.
GENERIC_CHUNKED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a chunked storage layout.
GENERIC_COMPACT - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a compact storage layout.
GENERIC_COMPACT_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a compact storage layout.
GENERIC_COMPACT_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a compact storage layout.
GENERIC_CONTIGUOUS - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a contiguous storage layout.
GENERIC_CONTIGUOUS_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a contiguous storage layout.
GENERIC_CONTIGUOUS_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents a contiguous storage layout.
GENERIC_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
GENERIC_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
GENERIC_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
GENERIC_DEFLATE_MAX - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
GENERIC_DEFLATE_MAX_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
GENERIC_DEFLATE_MAX_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
GENERIC_NO_COMPRESSION - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'no compression'.
GENERIC_NO_COMPRESSION_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'no compression'.
GENERIC_NO_COMPRESSION_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'no compression'.
GENERIC_SHUFFLE_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'standard compression' with a pre-filter shuffle, that is deflation with the default deflation level.
GENERIC_SHUFFLE_DEFLATE_MAX - Static variable in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures
Represents 'maximal compression' with a pre-filter shuffle, that is deflation with the default deflation level.
get() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Returns the ListParameters object constructed.
get() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
Returns the VerifyParameters object constructed.
get() - Static method in class ch.systemsx.cisd.hdf5.HDF5FactoryProvider
Returns the IHDF5Factory.
get(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the element index.
get(int, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the element index in the given targetUnit.
get(HDF5TimeUnit, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value of a one-dimensional array at the position defined by index in the given targetUnit.
get(HDF5TimeUnit, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value of a two-dimensional array at the position defined by indexX and indexY in the given targetUnit.
get(HDF5TimeUnit, int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value of a three-dimensional array at the position defined by indexX, indexY and indexZ in the given targetUnit.
get(HDF5TimeUnit, int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value of array at the position defined by indices in the given targetUnit.
get(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
get(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
get(int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
get(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
getAddress() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
Returns the address of the object in the file.
getAllAttributeNames(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the names of all attributes of the given objectPath.
getAllGroupMemberInformation(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the link information about all members of groupPath.
getAllGroupMembers(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns all members of groupPath, including internal groups that may be used by the library to do house-keeping.
getAnonType(Class<T>, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, using the default name chosen by JHDF5 which is based on the simple name of pojoClass.
getAnonType(String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Returns an anonymous enumeration type for this HDF5 file.
getAnonType(Class<? extends Enum<?>>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Returns an anonymous enumeration type for this HDF5 file.
getAnonType(EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Returns an anonymous enumeration type for this HDF5 file.
getArrayAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
getArrayAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getArrayAttr(String, String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getArrayAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) attribute named attributeName from the object objectPath.
getArrayAttr(String, String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) attribute named attributeName from the object objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp array attribute named attributeName from the data set objectPath and returns it as a Date[].
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an enum array (of rank 1) attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Gets the byte array values of an attribute attributeName of object objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a 1D object reference array attribute named attributeName from the object objectPath, resolving the names of the objects.
getArrayAttr(String, String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a 1D object reference array attribute named attributeName from the object objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short[] attribute named attributeName from the data set objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array attribute named attributeName from the object objectPath.
getArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a time duration array attribute named attributeName from the data set objectPath.
getArrayAttrAsLong(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp array attribute named attributeName from the data set objectPath.
getArrayAttrRaw(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getArrayAttrRaw(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array attribute named attributeName from the object objectPath.
getArrayBlocks(String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this one-dimensional data set of compounds to iterate over.
getArrayBlocks(String, HDF5CompoundType<T>, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this one-dimensional data set of compounds to iterate over.
getArrayBlocks(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this one-dimensional data set of compounds to iterate over.
getArrayBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayBlocks(String, HDF5EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayDimensions(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the dimensions of objectPath(empty if this isno array type).
getArrayNaturalBlocks(String) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
getArrayNaturalBlocks(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getArrayNaturalBlocks(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getArrayNaturalBlocks(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Provides all natural blocks of this one-dimensional data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Provides all natural blocks of this one-dimensional string data set to iterate over.
getArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Provides all natural blocks of this one-dimensional data set of time durations to iterate over.
getArrayNaturalBlocksRaw(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getArrayNaturalBlocksRaw(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Provides all natural blocks of this one-dimensional string data set to iterate over.
getArrayRank(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the rank of the array of objectPath (0 if this is no array type).
getAsFlatArray() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the time duration values as a flat array.
getAsFlatArray(HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the time duration values as a flat array in the given targetUnit.
getAsObject(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
getAsObject(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
getAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
getAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getAttr(String, String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a boolean attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte attribute named attributeName from the data set objectPath.
getAttr(String, String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound attribute named attributeName from the object objectPath.
getAttr(String, String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound attribute named attributeName from the object objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp attribute named attributeName from the data set objectPath and returns it as a Date.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an enum attribute named attributeName from the data set objectPath.
getAttr(String, String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an enum attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference attribute named attributeName from the object objectPath, resolving the name of the object.
getAttr(String, String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference attribute named attributeName from the object objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short attribute named attributeName from the data set objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string attribute named attributeName from the object objectPath.
getAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a time duration attribute named attributeName from the data set objectPath.
getAttrAsLong(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp attribute named attributeName from the data set objectPath.
getAttrAsString(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an enum attribute named attributeName from the data set objectPath.
getAttributeInformation(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the information about a data set as a HDF5DataTypeInformation object.
getAttributeInformation(String, String, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the information about a data set as a HDF5DataTypeInformation object.
getAttributeNames(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the names of the attributes of the given objectPath.
getAttributeType(String, String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound attribute in attributeName of objectPath, mapping it to pojoClass.
getAttributeType(String, String, Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound attribute in attributeName of objectPath, mapping it to pojoClass.
getAttributeType(String, String, Class<T>, HDF5CompoundMappingHints, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound attribute in attributeName of objectPath, mapping it to pojoClass.
getAttributeType(String, String, Class<T>, HDF5CompoundMappingHints, HDF5DataTypeInformation.DataTypeInfoOptions, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound attribute in attributeName of objectPath, mapping it to pojoClass.
getAttributeType(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type for the data set dataSetPath.
getAttrRaw(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getAttrRaw(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string attribute named attributeName from the object objectPath.
getByteOrder() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
getChunkSize() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
getClonedType(HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the compound type cloned from the given templateType.
getCompleteness() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns how complete this entry is.
getCompoundMemberInformation() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns an array with the HDF5CompoundMemberInformation of all compound members.
getCompoundMemberInformation(HDF5DataTypeInformation.DataTypeInfoOptions) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns an array with the HDF5CompoundMemberInformation of all compound members.
getCompoundType() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the Java type of the compound.
getCompressionStrategy() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
 
getCopyAsFlatArray() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
getCrc32() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the CRC32 checksum of this entry, or 0, if this information is not available or if this entry is not a regular file.
getCrc32() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getCrc32Str() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation (using hexadecimal digits) of the CRC32 checksum of this entry, or "00000000", if this information is not available or if this entry is not a regular file.
getCreationTime() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
Returns the time of creation of this object (as number of seconds since start of the epoch).
getData() - Method in class ch.systemsx.cisd.hdf5.HDF5DataBlock
Returns the data block itself.
getData() - Method in class ch.systemsx.cisd.hdf5.HDF5MDDataBlock
Returns the data block itself.
getData() - Method in class ch.systemsx.cisd.hdf5.HDF5MDEnumBlock
Returns the data block itself.
getDataClass() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the data class (INTEGER, FLOAT, ...) of this type.
getDataSetInfo(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound member information for the data set dataSetPath in the order that the members appear in the compound type.
getDataSetInfo(String, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound member information for the data set dataSetPath in the order that the members appear in the compound type.
getDataSetInformation(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the information about a data set as a HDF5DataSetInformation object.
getDataSetInformation(String, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the information about a data set as a HDF5DataSetInformation object.
getDataSetInformation(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Returns the information about a data set as a HDF5DataSetInformation object.
getDataSetPath() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSet
Returns the path of this data set.
getDataSetPath() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
getDataSetType(String, Class<T>, boolean, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound data set in objectPath, mapping it to pojoClass.
getDataSetType(String, Class<T>, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound data set in objectPath, mapping it to pojoClass.
getDataSetType(String, Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound data set in objectPath, mapping it to pojoClass.
getDataSetType(String, Class<T>, HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound data set in objectPath, mapping it to pojoClass.
getDataSetType(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type for the given compound data set in objectPath, mapping it to pojoClass.
getDataSetType(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type for the data set dataSetPath.
getDataTypeInformation(HDF5DataTypeInformation.DataTypeInfoOptions) - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
Returns the data type information for this data type.
getDataTypeInformation() - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
Returns the data type information (with HDF5DataTypeInformation.DataTypeInfoOptions.DEFAULT) for this data type.
getDateArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Provides all natural blocks of this one-dimensional data set of Dates to iterate over.
getDateMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getDefault() - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds
 
getDescription() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Returns a description of this value.
getDimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the array dimensions of the data set.
getDimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the dimensions along each axis of this type (an empty array for a scalar type).
getDimensions(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the dimensions of objectPath.
getElementSize() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the size of one element (in bytes) of this type.
getElementSize(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the size of one element of objectPath.
getElementSizeForPadding() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
The element size as is relevant for padding to ensure memory alignment.
getEnumerationType() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns the (file-independent) EnumerationType of this (file-dependen) HDF5EnumerationType.
getEnumReturnType() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Returns the desired return type for enums.
getEnumReturnType(HDF5CompoundMemberMapping) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Returns the desired enumeration return type.
getEnumTypeMap() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the map of member names to enumeration types (only enum members will have an entry in the map).
getFile() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns the HDF5 file that this class is reading.
getFileFormatVersionBounds() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Returns the IHDF5WriterConfigurator.FileFormatVersionBounds compatibility setting for this writer.
getFileNumber() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
Returns the file number that the object is in.
getFileOrObjectPath() - Method in exception ch.systemsx.cisd.hdf5.h5ar.ArchiverException
 
getFilePointer() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
getGid() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the GID of the group owning this archive entry, or -1, if this information is not available.
getGid() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getGroup(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation of the group owning this archive entry, or "?", if this information is not available.
getGroupMemberInformation(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the link information about the members of groupPath.
getGroupMemberPaths(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the paths of the members of groupPath (including the parent).
getGroupMembers(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the members of groupPath.
getGroupMembers(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Returns the members of groupPath.
getHDF5ErrorStackAsString() - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Returns the error stack from the HDF5 library as a string.
getHdf5File() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
getHighBound() - Method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds
 
getHouseKeepingNameSuffix() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns the suffix used to mark and recognize internal (house keeping) files and groups.
getIndex() - Method in class ch.systemsx.cisd.hdf5.HDF5DataBlock
Returns the iteration index of this block, starting with 0.
getIndex() - Method in class ch.systemsx.cisd.hdf5.HDF5MDDataBlock
Returns the iteration index of this block, starting with { 0, ..., 0 }.
getIndex() - Method in class ch.systemsx.cisd.hdf5.HDF5MDEnumBlock
Returns the iteration index of this block, starting with { 0, ..., 0 }.
getInferredAnonType(Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type name> for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection.
getInferredAnonType(Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type name> for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection.
getInferredAnonType(T, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns anonyous the compound type name> for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection.
getInferredAnonType(T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection and using the default name chosen by JHDF5 which is based on the simple name of T.
getInferredAnonType(T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type name> for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection.
getInferredAnonType(T[], HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type name> for this HDF5 file, inferring the mapping from the Java compound type to the HDF5 type by reflection.
getInferredAnonType(List<String>, List<?>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, inferring the mapping from the Java types of the members.
getInferredAnonType(List<String>, List<?>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, inferring the mapping from the Java types of the members.
getInferredAnonType(String[], Object[], HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, inferring the mapping from the Java types of the members.
getInferredAnonType(String[], Object[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Returns the anonymous compound type for this HDF5 file, inferring the mapping from the Java types of the members.
getInferredType(String, Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with pojoClass.
getInferredType(String, Class<T>, HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with pojoClass.
getInferredType(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with pojoClass.
getInferredType(Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type for this HDF5 file, compatible with pojoClass.
getInferredType(Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type for this HDF5 file, compatible with pojoClass.
getInferredType(String, T, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(String, T, HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(String, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type for this HDF5 file, compatible with template.
getInferredType(String, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type for this HDF5 file, compatible with template.
getInferredType(String, T[], HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(String, T[], HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template.
getInferredType(String, List<String>, List<?>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String, List<String>, List<?>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String, List<String>, List<?>, HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(List<String>, List<?>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(List<String>, List<?>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String, String[], Object[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String, String[], Object[], HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String, String[], Object[], HDF5CompoundMappingHints, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String[], Object[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getInferredType(String[], Object[], HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with template and memberNames.
getLastModified() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the date and time of last modification of this entry, measured in seconds since the epoch (00:00:00 GMT, January 1, 1970), or -1, if this information is not available.
getLastModified() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getLastModifiedStr() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation of the date and time of last modification of this entry, or "?", if this information is not available.
getLength() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the number of members of this enumeration array.
getLength() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the number of elements.
getLength() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the number of elements.
getLinkInformation(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the link information for the given objectPath.
getLinkTarget() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the link target.
getLinkTarget() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getLinkType() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the type of this entry.
getLinkType() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getLowBound() - Method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds
 
getMajorErrorNumber() - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Get the major error number of the first error on the HDF5 library error stack.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte matrix attribute named attributeName from the data set objectPath.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double matrix attribute named attributeName from the data set objectPath.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float matrix attribute named attributeName from the data set objectPath.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int matrix attribute named attributeName from the data set objectPath.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long matrix attribute named attributeName from the data set objectPath.
getMatrixAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short matrix attribute named attributeName from the data set objectPath.
getMaxDimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the largest possible array dimensions of the data set.
getMDArrayAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getMDArrayAttr(String, String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getMDArrayAttr(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a multi-dimensional array byte attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank N) attribute named attributeName from the object objectPath.
getMDArrayAttr(String, String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank N) attribute named attributeName from the object objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a multi-dimensional array double attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an enum array (of rank 1) attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a multi-dimensional array float attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a multi-dimensional array int attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a multi-dimensional array long attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference array attribute named attributeName from the object objectPath, resolving the names of the objects.
getMDArrayAttr(String, String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference array attribute named attributeName from the object objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a multi-dimensional array short attribute named attributeName from the data set objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a multi-dimensional string array attribute named attributeName from the object objectPath.
getMDArrayAttr(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a multi-dimension time duration array attribute named attributeName from the data set objectPath.
getMDArrayAttrAsLong(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.
getMDArrayAttrRaw(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getMDArrayAttrRaw(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a multi-dimensional string array attribute named attributeName from the object objectPath.
getMDArrayBlocks(String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayBlocks(String, HDF5CompoundType<T>, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayBlocks(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Provides all natural blocks of this multi-dimensional data set of compounds to iterate over.
getMDArrayBlocks(String, HDF5EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getMDArrayNaturalBlocks(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
getMDArrayNaturalBlocks(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Provides all natural blocks of this multi-dimensional string data set to iterate over.
getMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getMDArrayNaturalBlocksRaw(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
getMDArrayNaturalBlocksRaw(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Provides all natural blocks of this multi-dimensional string data set to iterate over.
getMemberInfo(Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the member information for the committed compound data type compoundClass (using its "simple name") in the order that the members appear in the compound type.
getMemberInfo(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the member information for the committed compound data type dataTypeName in the order that the members appear in the compound type.
getMemberInfo(String, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the member information for the committed compound data type dataTypeName in the order that the members appear in the compound type.
getMemberName(int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the name of compound member idx.
getMemberOffsetInMemory(int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the memory offset (within the record) of compound member idx (in bytes).
getMemberOffSetOnDisk(int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the disk offset (within the record) of compound member idx (in bytes).
getMemberSize(int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the size of compound member idx (in bytes).
getMessage() - Method in exception hdf.hdf5lib.exceptions.HDF5Exception
Returns the detail message of this exception
getMessage() - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
 
getMinorError(long) - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Return a error message for the minor error number.
getMinorErrorNumber() - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Get the minor error number of the first error on the HDF5 library error stack.
getName() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns the name of this type, if it exists, or NONAME otherwise.
getName() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the name of the path this entry.
getName() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getName() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Returns the name of the member.
getName() - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
Returns a name for this type, or UNKNOWN
getNamedType(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNamedType(Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNamedType(String, Class<T>, HDF5CompoundMappingHints) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNamedType(String, Class<T>, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNamedType(String, Class<T>, HDF5CompoundMappingHints, HDF5DataTypeInformation.DataTypeInfoOptions) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNamedType(String, Class<T>, HDF5CompoundMappingHints, HDF5DataTypeInformation.DataTypeInfoOptions, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the named compound type with name dataTypeName from file, mapping it to pojoClass.
getNumberOfAttributes() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
Returns the number of attributes that is object has.
getNumberOfElements() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the total number of elements of this data set.
getNumberOfElements() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the number of elements of this type.
getNumberOfElements(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the total number of elements of objectPath.
getNumberOfMembers() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the number of compound members.
getObjectInformation(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the object information for the given objectPath.
getObjectType(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the type of the given objectPath.
getObjectType(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the type of the given objectPath.
getOffset() - Method in class ch.systemsx.cisd.hdf5.HDF5DataBlock
Returns the offset of this block in the data set.
getOffset() - Method in class ch.systemsx.cisd.hdf5.HDF5MDDataBlock
Returns the offset in the data set for the current iteration in each dimension.
getOffset() - Method in class ch.systemsx.cisd.hdf5.HDF5MDEnumBlock
Returns the offset in the data set for the current iteration in each dimension.
getOffsetInMemory() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Returns the byte offset of this member within the compound data type in memory.
getOffsetOnDisk() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Returns the byte offset of this member within the compound data type on disk.
getOpenHDF5FileCount() - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Returns the number of open HDF5 files in the library.
getOrdinal() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Returns the ordinal value.
getOrdinal(int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the ordinal value for the arrayIndex.
getOrdinal(int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the ordinal value for the arrayIndex.
getOrdinal(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the ordinal value for the arrayIndex.
getOrdinal(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the ordinal value for the arrayIndex.
getOrdinalValues() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the ordinal values for all elements of this array.
getParentPath() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the parent directory of the path of this entry.
getParentPath() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getPath() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the full path of this entry.
getPermissions() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the access permissions of this archive entry, or -1, if this information is not available.
getPermissions() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getPermissionsString(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation of the access permissions of this archive entry, or "?", if this information is not available.
getRank() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the rank (number of axis) of this data set.
getRank() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the rank (number of dimensions) of this type (0 for a scalar type).
getRank(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the rank of this data set of objectPath.
getRawDataClass() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the raw data class (INTEGER, FLOAT, ...) of this type.
getRealName() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the name of the path this entry.
getRealParentPath() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the real parent directory of the path of this entry.
getRealPath() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the real full path of this entry.
getRecordSizeInMemory() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the size of the record in memory (in bytes).
getRecordSizeOnDisk() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns the size of the record on disk (in bytes).
getReferenceCount() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
Returns the number of references that point to this object.
getSize() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the size of this entry, if this entry is a regular file, or 0 otherwise.
getSize() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getSize() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the total size (in bytes) of this data set.
getSize() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the total size (in bytes) of this data set.
getSize(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the total size (in bytes) of objectPath.
getSpaceDimensions(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the dimensions of the space of objectPath (empty if this is a scalar space).
getSpaceRank(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the rank of the space of objectPath (0 if this is a scalar space).
getSpaceRankExpected() - Method in exception ch.systemsx.cisd.hdf5.exceptions.HDF5SpaceRankMismatch
 
getSpaceRankFound() - Method in exception ch.systemsx.cisd.hdf5.exceptions.HDF5SpaceRankMismatch
 
getStatus(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a status string for this entry.
getStorageForm() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns the HDF5EnumerationType.EnumStorageForm of this enumeration type.
getStorageForm() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns the HDF5EnumerationType.EnumStorageForm of this enumeration type.
getStorageLayout() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the storage layout of the data set in the HDF5 file.
getStorageSize() - Method in enum ch.systemsx.cisd.hdf5.HDF5EnumerationType.EnumStorageForm
Return the number of bytes (1, 2 or 4) of this storage form.
getTag() - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueType
Returns the tag of this opaque type.
getTimeStampArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Provides all natural blocks of this one-dimensional data set of time stamps to iterate over.
getTimeStampMDArrayNaturalBlocks(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Provides all natural blocks of this multi-dimensional data set to iterate over.
getTimeUnit(HDF5DataTypeVariant) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns the time unit for the given typeVariant.
getTimeUnit(int) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns the time unit for the given typeVariantOrdinal.
getType() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Returns the type information of the member.
getType() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Returns the type of this enumeration value.
getType() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the type of this enumeration array.
getType() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the type of this enumeration array.
getType(String, Class<T>, boolean, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with pojoClass.
getType(String, Class<T>, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns the compound type name> for this HDF5 file.
getType(Class<T>, HDF5CompoundMemberMapping...) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever
Returns a compound type name> for this HDF5 file, compatible with pojoClass.
getType(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(String, String[], boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(EnumerationType, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(String, Class<? extends Enum<?>>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(String, Class<T>, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getType(Class<? extends Enum<?>>, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumTypeRetriever
Returns the enumeration type name for this HDF5 file.
getTypeInformation() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the data type information for the data set.
getTypeVariant() - Method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Returns the type variant corresponding to this unit.
getUid() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the UID of the user owning this archive entry, or -1, if this information is not available.
getUid() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
getUnit() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
The time unit of the duration.
getUnit() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the time unit.
getUnit() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the time unit.
getUnmappedCompoundMemberInformation() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns an with the HDF5CompoundMemberInformation of compound members that are not mapped to the in-memory representation.
getUnmappedCompoundMemberNames() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns an array with the names of compound members that are not mapped to the in-memory representation.
getUnmappedFieldNames() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns an array with names of fields of the in-memory representation that do not map to any compound member in the on-disk representation.
getUsableLength() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
The length that is usable.
getUser(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation of the user owning this archive entry, or "?", if this information is not available.
getValue() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Returns the string value.
getValue(Class<T>) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Returns the value as Enum of type enumClass.
getValue(int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the string value for arrayIndex.
getValue(Class<T>, int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the value as Enum of type enumClass.
getValue(int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the string value for arrayIndex.
getValue(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the string value for arrayIndex.
getValue(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the string value for arrayIndex.
getValue(Class<T>, int...) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the value as Enum of type enumClass.
getValue() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
The time duration, see HDF5TimeDuration.getUnit() for the time unit.
getValue(HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
The time duration in the given targetUnit.
getValue(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the value element index.
getValue(int, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the value element index in the given targetUnit.
getValue(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element index.
getValue(int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element (indexX,indexY).
getValue(int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element (indexX,indexY,indexZ).
getValue(int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element indices.
getValue(HDF5TimeUnit, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element index in the given targetUnit.
getValue(HDF5TimeUnit, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element index in the given targetUnit.
getValue(HDF5TimeUnit, int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element index in the given targetUnit.
getValue(HDF5TimeUnit, int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the value element index in the given targetUnit.
getValues() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns the allowed values of this enumeration type.
getValues() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns the allowed values of this enumeration type.
getValues() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the time duration values.
getValues(HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Returns the time duration values in the given targetUnit.
getValues() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the time duration values.
getValues(HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the time duration values in the given targetUnit.
getVerifiedCrc32() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the verified CRC32 checksum of this archive entry, or 0, if this information is not available.
getVerifiedCrc32Str() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation (using hexadecimal digits) of the verified CRC32 checksum of this entry, or "00000000", if this information is not available or if this entry is not a regular file.
getVerifiedLastModified() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the verified date and time of last modification of this entry, measured in seconds since the epoch (00:00:00 GMT, January 1, 1970), or -1, if this information is not available.
getVerifiedLastModifiedStr() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns a string representation of the verified date and time of last modification of this entry, or "?", if this information is not available.
getVerifiedSize() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the verified size of this archive entry, or -1, if this information is not available.
gid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
gid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewDirectoryArchiveEntry
 
gid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
gid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewSymLinkArchiveEntry
 

H

hasAttribute(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true, if the objectPath has an attribute with name attributeName.
hasChecksum() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true, if this archive entry has a CRC32 checksum stored.
hashCode() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSet
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetTemplate
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5ObjectInformation
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
 
hashCode() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
hasLinkTarget() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true, if this entry has a meaningful link target.
hasMDCImage(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Returns true if the HDF5 file has a metadata cache image.
hasMDCImage(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Returns true if the HDF5 file has a metadata cache image.
hasMDCImage(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Returns true if the HDF5 file has a metadata cache image.
hasMDCImage() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns true, if this file has an MDC image.
hasVerificationInfo() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true, if this entry has verification information on archive integrity.
hdf.hdf5lib.exceptions - package hdf.hdf5lib.exceptions
 
HDF5ArchiverFactory - Class in ch.systemsx.cisd.hdf5.h5ar
A factory for IHDF5Archiver
HDF5ArchiverFactory() - Constructor for class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
 
HDF5ArchiverMain - Class in ch.systemsx.cisd.hdf5.h5ar
The main class of the HDF5 based archiver.
HDF5ArrayBlockParams - Class in ch.systemsx.cisd.hdf5
A parameter class to specify the block and slice to read from or write to a multi-dimensional array.
HDF5ArrayBlockParamsBuilder - Class in ch.systemsx.cisd.hdf5
A builder class for HDF5ArrayBlockParams.
HDF5AtomException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5AtomException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5AtomException
Constructs an HDF5AtomException with no specified detail message.
HDF5AtomException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5AtomException
Constructs an HDF5AtomException with the specified detail message.
HDF5AttributeException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5AttributeException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5AttributeException
Constructs an HDF5AttributeException with no specified detail message.
HDF5AttributeException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5AttributeException
Constructs an HDF5AttributeException with the specified detail message.
HDF5BooleanReader - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5BooleanReader.
HDF5BooleanWriter - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5BooleanWriter.
HDF5BtreeException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5BtreeException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5BtreeException
Constructs an HDF5BtreeException with no specified detail message.
HDF5BtreeException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5BtreeException
Constructs an HDF5BtreeException with the specified detail message.
HDF5CompoundDataList - Class in ch.systemsx.cisd.hdf5
A list to be used to store the members of a compound.
HDF5CompoundDataList() - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataList
 
HDF5CompoundDataList(Collection<? extends Object>) - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataList
 
HDF5CompoundDataList(int) - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataList
 
HDF5CompoundDataMap - Class in ch.systemsx.cisd.hdf5
A map to be used to store the member data of a compound.
HDF5CompoundDataMap() - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataMap
 
HDF5CompoundDataMap(int, float) - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataMap
 
HDF5CompoundDataMap(int) - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataMap
 
HDF5CompoundDataMap(Map<? extends String, ? extends Object>) - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundDataMap
 
HDF5CompoundMappingHints - Class in ch.systemsx.cisd.hdf5
A class to store general hints that can influence the compound member mapping.
HDF5CompoundMappingHints() - Constructor for class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
 
HDF5CompoundMappingHints.EnumReturnType - Enum in ch.systemsx.cisd.hdf5
 
HDF5CompoundMemberInformation - Class in ch.systemsx.cisd.hdf5
Contains information about one member of an HDF5 compound data type.
HDF5CompoundMemberMapping - Class in ch.systemsx.cisd.hdf5
A class that maps a Java field to a member of a HDF5 compound data type.
HDF5CompoundType<T> - Class in ch.systemsx.cisd.hdf5
The definition of a HDF5 compound type.
HDF5DataBlock<T> - Class in ch.systemsx.cisd.hdf5
A class that is used for iterating over a data set block by block, using natural data blocks.
HDF5DataClass - Enum in ch.systemsx.cisd.hdf5
Identifies the class of a data type.
HDF5DataFiltersException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5DataFiltersException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataFiltersException
Constructs an HDF5DataFiltersException with no specified detail message.
HDF5DataFiltersException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataFiltersException
Constructs an HDF5DataFiltersException with the specified detail message.
HDF5DataSet - Class in ch.systemsx.cisd.hdf5
An object to represent an HDF5 data set.
HDF5DataSetInformation - Class in ch.systemsx.cisd.hdf5
A class that holds relevant information about a data set.
HDF5DatasetInterfaceException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5DatasetInterfaceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5DatasetInterfaceException
Constructs an HDF5DatasetInterfaceException with no specified detail message.
HDF5DatasetInterfaceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5DatasetInterfaceException
Constructs an HDF5DatasetInterfaceException with the specified detail message.
HDF5DataSetRandomAccessFile - Class in ch.systemsx.cisd.hdf5.io
A IRandomAccessFile backed by an HDF5 dataset.
HDF5DataSetTemplate - Class in ch.systemsx.cisd.hdf5
An object to represent a template of an HDF5 data set.
HDF5DataspaceInterfaceException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5DataspaceInterfaceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException
Constructs an HDF5DataspaceInterfaceException with no specified detail message.
HDF5DataspaceInterfaceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataspaceInterfaceException
Constructs an HDF5DataspaceInterfaceException with the specified detail message.
HDF5DataStorageException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5DataStorageException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataStorageException
Constructs an HDF5DataStorageExceptionn with no specified detail message.
HDF5DataStorageException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5DataStorageException
Constructs an HDF5DataStorageException with the specified detail message.
HDF5DataType - Class in ch.systemsx.cisd.hdf5
The abstract base class of Java wrappers for HDF data types.
HDF5DataTypeInformation - Class in ch.systemsx.cisd.hdf5
A class that holds relevant information about a data type.
HDF5DataTypeInformation.DataTypeInfoOptions - Class in ch.systemsx.cisd.hdf5
An object that represents the options for a data type information object.
HDF5DatatypeInterfaceException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5DatatypeInterfaceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException
Constructs an HDF5DatatypeInterfaceException with no specified detail message.
HDF5DatatypeInterfaceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException
Constructs an HDF5DatatypeInterfaceException with the specified detail message.
HDF5DataTypeVariant - Enum in ch.systemsx.cisd.hdf5
An enum of all type variants.
HDF5DateTimeWriter - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5DateTimeWriter.
HDF5EnumerationType - Class in ch.systemsx.cisd.hdf5
A class that represents an enumeration for a given HDF5 file and values array.
HDF5EnumerationType.EnumStorageForm - Enum in ch.systemsx.cisd.hdf5
The storage form (as size in bytes) of an enumeration type.
HDF5EnumerationValue - Class in ch.systemsx.cisd.hdf5
A class the represents an HDF enumeration value.
HDF5EnumerationValue(HDF5EnumerationType, Enum<?>) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Creates an enumeration value.
HDF5EnumerationValue(HDF5EnumerationType, int) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Creates an enumeration value.
HDF5EnumerationValue(HDF5EnumerationType, String) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
Creates an enumeration value.
HDF5EnumerationValueArray - Class in ch.systemsx.cisd.hdf5
A class the represents an array of HDF enumeration values.
HDF5EnumerationValueArray(HDF5EnumerationType, byte[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Creates an enumeration value array.
HDF5EnumerationValueArray(HDF5EnumerationType, short[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Creates an enumeration value array.
HDF5EnumerationValueArray(HDF5EnumerationType, int[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Creates an enumeration value array.
HDF5EnumerationValueArray(HDF5EnumerationType, Enum<?>[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Creates an enumeration value array.
HDF5EnumerationValueArray(HDF5EnumerationType, String[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Creates an enumeration value array.
HDF5EnumerationValueMDArray - Class in ch.systemsx.cisd.hdf5
A class that represents a multi-dimensional array of HDF enumeration values.
HDF5EnumerationValueMDArray(HDF5EnumerationType, MDAbstractArray<?>) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Creates an enumeration value array.
HDF5EnumerationValueMDArray(int) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Creates an empty array with given rank.
HDF5EnumerationValueMDArray(HDF5EnumerationType, MDByteArray) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Creates an enumeration value array.
HDF5EnumerationValueMDArray(HDF5EnumerationType, MDShortArray) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Creates an enumeration value array.
HDF5EnumerationValueMDArray(HDF5EnumerationType, MDIntArray) - Constructor for class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Creates an enumeration value array.
HDF5Exception - Exception in hdf.hdf5lib.exceptions
The class HDF5Exception returns errors from the Java HDF5 Interface.
HDF5Exception() - Constructor for exception hdf.hdf5lib.exceptions.HDF5Exception
Constructs an HDF5Exception with no specified detail message.
HDF5Exception(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5Exception
Constructs an HDF5Exception with the specified detail message.
HDF5ExternalFileListException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5ExternalFileListException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5ExternalFileListException
Constructs an HDF5ExternalFileListException with no specified detail message.
HDF5ExternalFileListException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5ExternalFileListException
Constructs an HDF5ExternalFileListException with the specified detail message.
HDF5Factory - Class in ch.systemsx.cisd.hdf5
A static wrapper for the IHDF5Factory for creating writers and readers of HDF5 files.
HDF5Factory() - Constructor for class ch.systemsx.cisd.hdf5.HDF5Factory
 
HDF5FactoryProvider - Class in ch.systemsx.cisd.hdf5
Provides access to a factory for HDF5 readers and writers.
HDF5FileInterfaceException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5FileInterfaceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5FileInterfaceException
Constructs an HDF5FileInterfaceException with no specified detail message.
HDF5FileInterfaceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5FileInterfaceException
Constructs an HDF5FileInterfaceException with the specified detail message.
HDF5FileNotFoundException - Exception in ch.systemsx.cisd.hdf5.exceptions
The class HDF5JavaException returns errors from the Java wrapper of theHDF5 library.
HDF5FileNotFoundException(File, String) - Constructor for exception ch.systemsx.cisd.hdf5.exceptions.HDF5FileNotFoundException
 
HDF5FloatStorageFeatureBuilder() - Constructor for class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
 
HDF5FloatStorageFeatureBuilder(HDF5AbstractStorageFeatures) - Constructor for class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
 
HDF5FloatStorageFeatures - Class in ch.systemsx.cisd.hdf5
An object representing the storage features that are to be used for a float data set.
HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder - Class in ch.systemsx.cisd.hdf5
A builder for storage features.
HDF5FunctionArgumentException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5FunctionArgumentException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5FunctionArgumentException
Constructs an HDF5FunctionArgumentException with no specified detail message.
HDF5FunctionArgumentException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5FunctionArgumentException
Constructs an HDF5FunctionArgumentException with the specified detail message.
HDF5FunctionEntryExitException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5FunctionEntryExitException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5FunctionEntryExitException
Constructs an HDF5FunctionEntryExitException with no specified detail message.
HDF5FunctionEntryExitException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5FunctionEntryExitException
Constructs an HDF5FunctionEntryExitException with the specified detail message.
HDF5GenericStorageFeatureBuilder() - Constructor for class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
 
HDF5GenericStorageFeatureBuilder(HDF5AbstractStorageFeatures) - Constructor for class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
 
HDF5GenericStorageFeatures - Class in ch.systemsx.cisd.hdf5
An object representing the storage features that are to be used for a data set.
HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder - Class in ch.systemsx.cisd.hdf5
A builder for storage features.
HDF5HeapException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5HeapException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5HeapException
Constructs an HDF5HeapException with no specified detail message.
HDF5HeapException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5HeapException
Constructs an HDF5HeapException with the specified detail message.
HDF5InternalErrorException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5InternalErrorException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5InternalErrorException
Constructs an HDF5InternalErrorException with no specified detail message.
HDF5InternalErrorException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5InternalErrorException
Constructs an HDF5InternalErrorException with the specified detail message.
HDF5IntStorageFeatureBuilder() - Constructor for class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
 
HDF5IntStorageFeatureBuilder(HDF5AbstractStorageFeatures) - Constructor for class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
 
HDF5IntStorageFeatures - Class in ch.systemsx.cisd.hdf5
An object representing the storage features that are to be used for an integer data set.
HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder - Class in ch.systemsx.cisd.hdf5
A builder for storage features.
HDF5IOAdapterFactory - Class in ch.systemsx.cisd.hdf5.io
A factory of I/O adapter for HDF5 data sets.
HDF5IOAdapterFactory() - Constructor for class ch.systemsx.cisd.hdf5.io.HDF5IOAdapterFactory
 
HDF5JavaException - Exception in hdf.hdf5lib.exceptions
The class HDF5JavaException returns errors from the Java wrapper of theHDF5 library.
HDF5JavaException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5JavaException
Constructs an HDF5JavaException with no specified detail message.
HDF5JavaException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5JavaException
Constructs an HDF5JavaException with the specified detail message.
HDF5LibraryException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5LibraryException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5LibraryException
Constructs an HDF5LibraryException with no specified detail message.
HDF5LibraryException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5LibraryException
Constructs an HDF5LibraryException with the specified detail message.
HDF5LinkInformation - Class in ch.systemsx.cisd.hdf5
Information about a link in an HDF5 file.
HDF5LowLevelIOException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5LowLevelIOException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5LowLevelIOException
Constructs an HDF5LowLevelIOException with no specified detail message.
HDF5LowLevelIOException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5LowLevelIOException
Constructs an HDF5LowLevelIOException with the specified detail message.
HDF5MDDataBlock<T extends ch.systemsx.cisd.base.mdarray.MDAbstractArray<?>> - Class in ch.systemsx.cisd.hdf5
A class that is used for iterating over a data set block by block, using natural data blocks.
HDF5MDEnumBlock - Class in ch.systemsx.cisd.hdf5
A class that is used for iterating over an Enum data set block by block, using natural data blocks.
HDF5MetaDataCacheException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5MetaDataCacheException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5MetaDataCacheException
Constructs an HDF5MetaDataCacheException with no specified detail message.
HDF5MetaDataCacheException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5MetaDataCacheException
Constructs an HDF5MetaDataCacheException with the specified detail message.
HDF5ObjectHeaderException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5ObjectHeaderException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5ObjectHeaderException
Constructs an HDF5ObjectHeaderException with no specified detail message.
HDF5ObjectHeaderException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5ObjectHeaderException
Constructs an HDF5ObjectHeaderException with the specified detail message.
HDF5ObjectInformation - Class in ch.systemsx.cisd.hdf5
Information about an object in an HDF5 file.
HDF5ObjectType - Enum in ch.systemsx.cisd.hdf5
An enumeration that represents the basic HDF5 object types.
HDF5OpaqueReader - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5OpaqueReader
HDF5OpaqueType - Class in ch.systemsx.cisd.hdf5
A class that represents an opaque data type for a given HDF5 file and tag.
HDF5OpaqueWriter - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5OpaqueWriter.
HDF5PropertyListInterfaceException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5PropertyListInterfaceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException
Constructs an HDF5PropertyListInterfaceException with no specified detail message.
HDF5PropertyListInterfaceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5PropertyListInterfaceException
Constructs an HDF5PropertyListInterfaceException with the specified detail message.
HDF5ReferenceException - Exception in hdf.hdf5lib.exceptions
 
HDF5ReferenceException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5ReferenceException
Constructs an HDF5ReferenceException with no specified detail message.
HDF5ReferenceException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5ReferenceException
Constructs an HDF5ReferenceException with the specified detail message.
HDF5ReferenceReader - Class in ch.systemsx.cisd.hdf5
A reader for HDF5 references.
HDF5ReferenceWriter - Class in ch.systemsx.cisd.hdf5
The implementation of IHDF5ReferenceWriter.
HDF5ResourceUnavailableException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5ResourceUnavailableException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5ResourceUnavailableException
Constructs an HDF5ResourceUnavailableException with no specified detail message.
HDF5ResourceUnavailableException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5ResourceUnavailableException
Constructs an HDF5FunctionArgumentException with the specified detail message.
HDF5SpaceRankMismatch - Exception in ch.systemsx.cisd.hdf5.exceptions
An exception for signaling that the data space of a data set has an unexpected rank.
HDF5SpaceRankMismatch(int, int) - Constructor for exception ch.systemsx.cisd.hdf5.exceptions.HDF5SpaceRankMismatch
 
HDF5StorageLayout - Enum in ch.systemsx.cisd.hdf5
The storage layout of a data set in the HDF5 file.
HDF5StringReader - Class in ch.systemsx.cisd.hdf5
The implementation of IHDF5StringReader.
HDF5StringWriter - Class in ch.systemsx.cisd.hdf5
The implementation of IHDF5StringWriter.
HDF5SymbolTableException - Exception in hdf.hdf5lib.exceptions
The class HDF5LibraryException returns errors raised by the HDF5 library.
HDF5SymbolTableException() - Constructor for exception hdf.hdf5lib.exceptions.HDF5SymbolTableException
Constructs an HDF5SymbolTableException with no specified detail message.
HDF5SymbolTableException(String) - Constructor for exception hdf.hdf5lib.exceptions.HDF5SymbolTableException
Constructs an HDF5SymbolTableException with the specified detail message.
HDF5TimeDuration - Class in ch.systemsx.cisd.hdf5
An object to store a time duration.
HDF5TimeDuration(long, HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDuration
 
HDF5TimeDurationArray - Class in ch.systemsx.cisd.hdf5
An array of time durations.
HDF5TimeDurationArray(long[], HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
Creates an array of timeDurations using a common timeUnit.
HDF5TimeDurationMDArray - Class in ch.systemsx.cisd.hdf5
A multi-dimensional array of time durations.
HDF5TimeDurationMDArray(MDLongArray, HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Creates an array of timeDurations using a common timeUnit.
HDF5TimeDurationMDArray(long[], int[], HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Creates an array of timeDurations using a common timeUnit.
HDF5TimeDurationMDArray(int[], HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Creates an array of dimension dimensions with timeUnit.
HDF5TimeDurationMDArray(HDF5TimeDuration[], int[], HDF5TimeUnit) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Creates an array of timeDurations using a common timeUnit.
HDF5TimeDurationMDArray(HDF5TimeDuration[], int[]) - Constructor for class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Creates an array of timeDurations using the smallest time unit.
HDF5TimeDurationWriter - Class in ch.systemsx.cisd.hdf5
Implementation of IHDF5TimeDurationWriter.
HDF5TimeUnit - Enum in ch.systemsx.cisd.hdf5
A TimeUnit represents a unit of a time duration.
hints(HDF5CompoundMappingHints) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets mapping hints for this mapping.
houseKeepingNameSuffix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Sets the suffix that is used to mark and recognize house keeping files and groups.

I

IArchiveEntryVisitor - Interface in ch.systemsx.cisd.hdf5.h5ar
A role to visit ArchiveEntrys.
IHDF5ArchiveInfoProvider - Interface in ch.systemsx.cisd.hdf5.h5ar
An info provider for HDF5 archives.
IHDF5Archiver - Interface in ch.systemsx.cisd.hdf5.h5ar
An interface for the HDF5 archiver.
IHDF5ArchiveReader - Interface in ch.systemsx.cisd.hdf5.h5ar
An interface for an HDF5 archive reader.
IHDF5BooleanReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading boolean and bit field values from HDF5 files.
IHDF5BooleanWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing boolean values to HDF5 files.
IHDF5ByteReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading byte values from HDF5 files.
IHDF5ByteWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing byte values to HDF5 files.
IHDF5CompoundInformationRetriever - Interface in ch.systemsx.cisd.hdf5
An interface to get information on HDF5 compound data sets and compound data types, and to create compound types from mappings to Java classes.
IHDF5CompoundInformationRetriever.IByteArrayInspector - Interface in ch.systemsx.cisd.hdf5
An interface for inspecting the byte array of compounds and compound arrays just after they are read from or before they are written to the HDF5 file.
IHDF5CompoundReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading compound values from HDF5 files.
IHDF5CompoundWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing compound values to HDF5 files.
IHDF5DateTimeReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading time and date values from HDF5 files.
IHDF5DateTimeWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing time and date values from HDF5 files.
IHDF5DoubleReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading double values from HDF5 files.
IHDF5DoubleWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing double values to HDF5 files.
IHDF5EnumReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading enumeration values from HDF5 files.
IHDF5EnumTypeRetriever - Interface in ch.systemsx.cisd.hdf5
An interface for retrieving HDF5 enum types.
IHDF5EnumValueCreator - Interface in ch.systemsx.cisd.hdf5
Interface for creation of enumeration values.
IHDF5EnumWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing enumeration values from HDF5 files.
IHDF5Factory - Interface in ch.systemsx.cisd.hdf5
A factory for creating writers and readers of HDF5 files.
IHDF5FileLevelReadOnlyHandler - Interface in ch.systemsx.cisd.hdf5
An interface for handling file-level information and status of the reader.
IHDF5FileLevelReadWriteHandler - Interface in ch.systemsx.cisd.hdf5
An interface for handling file-level information and status of the writer.
IHDF5FloatReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading float values from HDF5 files.
IHDF5FloatWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing float values to HDF5 files.
IHDF5IntReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading int values from HDF5 files.
IHDF5IntWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing int values to HDF5 files.
IHDF5LongReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading long values from HDF5 files.
IHDF5LongWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing long values to HDF5 files.
IHDF5ObjectReadOnlyInfoProviderHandler - Interface in ch.systemsx.cisd.hdf5
An interface for getting information on HDF5 objects like links, groups, data sets and data types.
IHDF5ObjectReadWriteInfoProviderHandler - Interface in ch.systemsx.cisd.hdf5
An interface for getting information on and handling HDF5 objects like links, groups, data sets and data types.
IHDF5OpaqueReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading any data sets as byte arrays (as 'opaque data', just like ordinary file systems treat files).
IHDF5OpaqueWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing opaque values to HDF5 files.
IHDF5Reader - Interface in ch.systemsx.cisd.hdf5
An interface for reading HDF5 files (HDF5 1.10.x and older).
IHDF5ReaderConfigurator - Interface in ch.systemsx.cisd.hdf5
A configurator for a IHDF5Reader.
IHDF5ReferenceReader - Interface in ch.systemsx.cisd.hdf5
An interface for reading references in HDF5 files.
IHDF5ReferenceWriter - Interface in ch.systemsx.cisd.hdf5
An interface for writing references.
IHDF5ShortReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading short values from HDF5 files.
IHDF5ShortWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing short values to HDF5 files.
IHDF5SimpleReader - Interface in ch.systemsx.cisd.hdf5
A HDF5 reader which contains only the basic methods.
IHDF5SimpleWriter - Interface in ch.systemsx.cisd.hdf5
A HDF5 writer which contains only the basic methods.
IHDF5StringReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading String values from HDF5 files.
IHDF5StringWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing String values to HDF5 files.
IHDF5TimeDurationReader - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for reading time duration values from HDF5 files.
IHDF5TimeDurationWriter - Interface in ch.systemsx.cisd.hdf5
An interface that provides methods for writing time duration values from HDF5 files.
IHDF5Writer - Interface in ch.systemsx.cisd.hdf5
An interface for writing HDF5 files (HDF5 1.6.x, HDF5 1.8.x or HDF5 1.10.x).
IHDF5WriterConfigurator - Interface in ch.systemsx.cisd.hdf5
The configuration of the writer is done by chaining calls to configuration methods before calling IHDF5WriterConfigurator.writer().
IHDF5WriterConfigurator.FileFormatVersion - Enum in ch.systemsx.cisd.hdf5
Enum for specifying a file format version.
IHDF5WriterConfigurator.FileFormatVersionBounds - Enum in ch.systemsx.cisd.hdf5
Enum for specifying the file format version boundaries.
IHDF5WriterConfigurator.SyncMode - Enum in ch.systemsx.cisd.hdf5
The mode of synchronizing changes (using a method like fsync(2)) to the HDF5 file with the underlying storage.
includeTopLevelDirectoryEntry() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Includes the top-level (or starting) directory into the listing.
includeTopLevelDirectoryEntry(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If includeTopLevelDirectoryEntry is true, includes the top-level directory into the listing, if it is false, exclude the top-level directory from the listing.
incNumberOfHyperRows(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
index(long...) - Method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParams
Sets the array block indices.
IndexMap - Class in ch.systemsx.cisd.hdf5
A map for storing index to index value mapping.
IndexMap() - Constructor for class ch.systemsx.cisd.hdf5.IndexMap
 
inferEnumerationTypeMap(T, IHDF5EnumTypeRetriever) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Infers the map from field names to HDF5EnumerationTypes for the given pojo object.
inferMapping(Class<?>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given pojoClass.
inferMapping(Class<?>, Map<String, HDF5EnumerationType>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given pojoClass.
inferMapping(Class<?>, HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given pojoClass.
inferMapping(Object, Map<String, HDF5EnumerationType>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
 
inferMapping(Object, Map<String, HDF5EnumerationType>, boolean) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
This method is using pojo to infer length and dimension information.
inferMapping(Object[], Map<String, HDF5EnumerationType>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
This method is using pojo to infer length and dimension information.
inferMapping(Object[], Map<String, HDF5EnumerationType>, boolean) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
This method is using pojo to infer length and dimension information.
inferMapping(Map<String, Object>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given compoundMap.
inferMapping(Map<String, Object>, HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given compoundMap.
inferMapping(List<String>, List<?>) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given memberNames and memberValues.
inferMapping(List<String>, List<?>, HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given memberNames and memberValues.
inferMapping(String[], Object[]) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given memberNames and memberValues.
inferMapping(String[], Object[], HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns the inferred compound member mapping for the given memberNames and memberValues.
inspect(byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundInformationRetriever.IByteArrayInspector
Called with the byte array.
INSTANCE - Static variable in class ch.systemsx.cisd.hdf5.BuildAndEnvironmentInfo
 
int16() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for short / int16.
int16() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for short / int16.
int32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for int / int32.
int32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for int / int32.
int64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for long / int64.
int64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for long / int64.
int8() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for byte / int8.
int8() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for byte / int8.
INT_AUTO_SCALING - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values.
INT_AUTO_SCALING_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level.
INT_AUTO_SCALING_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level.
INT_AUTO_SCALING_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level.
INT_AUTO_SCALING_DEFLATE_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level, using unsigned integers.
INT_AUTO_SCALING_DEFLATE_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level, using unsigned integers.
INT_AUTO_SCALING_DEFLATE_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values combined with deflation with the default deflation level, using unsigned integers.
INT_AUTO_SCALING_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values.
INT_AUTO_SCALING_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values.
INT_AUTO_SCALING_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values with unsigned integers.
INT_AUTO_SCALING_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values with unsigned integers.
INT_AUTO_SCALING_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents automatic scaling for integer values with unsigned integers.
INT_CHUNKED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout.
INT_CHUNKED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout.
INT_CHUNKED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout.
INT_CHUNKED_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout with unsigned integers.
INT_CHUNKED_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout with unsigned integers.
INT_CHUNKED_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a chunked (extendable) storage layout with unsigned integers.
INT_COMPACT - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout.
INT_COMPACT_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout.
INT_COMPACT_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout.
INT_COMPACT_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout with unsigned integers.
INT_COMPACT_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout with unsigned integers.
INT_COMPACT_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a compact storage layout with unsigned integers.
INT_CONTIGUOUS - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout.
INT_CONTIGUOUS_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout.
INT_CONTIGUOUS_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout.
INT_CONTIGUOUS_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout with unsigned integers.
INT_CONTIGUOUS_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout with unsigned integers.
INT_CONTIGUOUS_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents a contiguous storage layout with unsigned integers.
INT_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
INT_DEFLATE_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
INT_DEFLATE_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression', that is deflation with the default deflation level.
INT_DEFLATE_MAX - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
INT_DEFLATE_MAX_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
INT_DEFLATE_MAX_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression', that is deflation with the maximal deflation level.
INT_DEFLATE_MAX_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression' with unsigned integers, that is deflation with the maximal deflation level.
INT_DEFLATE_MAX_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression' with unsigned integers, that is deflation with the maximal deflation level.
INT_DEFLATE_MAX_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'maximal compression' with unsigned integers, that is deflation with the maximal deflation level.
INT_DEFLATE_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression' with unsigned integers, that is deflation with the default deflation level.
INT_DEFLATE_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression' with unsigned integers, that is deflation with the default deflation level.
INT_DEFLATE_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression' with unsigned integers, that is deflation with the default deflation level.
INT_NO_COMPRESSION - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', signed integers, use default storage layout.
INT_NO_COMPRESSION_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', use default storage layout.
INT_NO_COMPRESSION_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', use default storage layout.
INT_NO_COMPRESSION_UNSIGNED - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', unsigned integers, use default storage layout.
INT_NO_COMPRESSION_UNSIGNED_DELETE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', unsigned integers, use default storage layout.
INT_NO_COMPRESSION_UNSIGNED_KEEP - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'no compression', unsigned integers, use default storage layout.
INT_SHUFFLE_DEFLATE - Static variable in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Represents 'standard compression' with a pre-filter shuffle, that is deflation with the default deflation level.
isArrayType() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true if this type is an HDF5 array type.
isBitField() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if the data set is a bitfield type.
isBitSet(String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
isBitSet(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Returns true if the bitIndex of the bit field dataset objectPath is set, false otherwise.
isClosed() - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Returns true if this archive reader has been already closed.
isClosed() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns true if this reader has been already closed.
isCompatible(Class<?>) - Method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true if type is compatible with this type variant.
isCompress() - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
isDataSet(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to HDF5ObjectType.DATASET and false otherwise.
isDataSet(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a data set and false otherwise.
isDataSet(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a data set and false otherwise.
isDataType(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to HDF5ObjectType.DATATYPE and false otherwise.
isDataType(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a data type and false otherwise.
isDataType(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a data type and false otherwise.
isDirectory() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns if this entry is of type FileLinkType.DIRECTORY.
isDirectory(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns true, if a directory entry path exists in the archive.
isDiskRepresentationIncomplete() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns true if there are fields in the in-memory representation that are not mapped to any compound member in the on-disk representation.
isEnum() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if the data set is an enumeration type.
isEquivalent(HDF5TimeDuration) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
Returns true, if that represents the same time duration.
isExternalLink() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns true, if the link is an external link.
isExternalLink(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to HDF5ObjectType.EXTERNAL_LINK and false otherwise.
isExternalLink(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents an external link and false otherwise.
isFollowSymbolicLinks() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if directories resolved from symbolic links should be traversed.
isGroup(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to HDF5ObjectType.GROUP and false otherwise.
isGroup(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a group and false otherwise.
isGroup(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a group and false otherwise.
isGroup(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Returns true if the objectPath exists and represents a group and false otherwise.
isHDF5File(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Returns true, if the file is an HDF5 file and false otherwise.
isHDF5File(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Returns true, if the file named filePath is an HDF5 file and false otherwise.
isHDF5File(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Returns true, if the file is an HDF5 file and false otherwise.
isHouseKeepingObject(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if objectPath denotes an internal (house-keeping) object.
isIncludeTopLevelDirectoryEntry() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if the top-level directory entry should be listed as well.
isMappingIncomplete() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns true, if the mapping between the in-memory and the on-disk representation is incomplete, that is if either HDF5CompoundType.isDiskRepresentationIncomplete() or HDF5CompoundType.isMemoryRepresentationIncomplete() returns true.
isMDCImageGenerationEnabled() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns true, if the generation of a metadata cache image is enabled for this file and false otherwise.
isMemoryRepresentationIncomplete() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns true if there are compound members in the on-disk representation that are not mapped to fields in the in-memory representation.
isNumeric() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters
Returns if user id and permissions failures should be reported numerically.
isOK() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true if this archive entry has been verified successfully (or if no verification information is available).
isPerformNumericConversions() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadOnlyHandler
Returns true, if numeric conversions should be performed automatically, e.g.
isReadLinkTargets() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if symbolic link targets should be read.
isReadOnly() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
Returns true if the HDF5 file has been opened in read-only mode.
isRecursive() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if recursive listing is enabled, i.e.
isRecursive() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters
Returns if recursive verification is enabled, i.e.
isReference() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns true if this field should be mapped to a refernce type.
isRegularFile() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns if this entry is of type FileLinkType.REGULAR_FILE.
isRegularFile(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns true, if a regular file entry path exists in the archive.
isRequireTypesToBeEqual() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
Returns true, if this type is expected to be equal to the type of a data set it is used to read.
isResolveSymbolicLinks() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if symbolic links should be resolved.
isScalar() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns true, if the rank of this data set is 0.
isSealed() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Returns true if this strategy is sealed.
isSigned() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns true, if this data set type has a sign anf false otherwise.
isSigned() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if this data set type has a sign anf false otherwise.
isSigned() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures
Returns true if signed integers should be stored, false otherwise.
isSoftLink() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns true, if the link is a soft link.
isSoftLink(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to HDF5ObjectType.SOFT_LINK and false otherwise.
isSoftLink(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents a soft link and false otherwise.
isSuppressDirectoryEntries() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if directory entries should be suppressed from being listed.
isSymbolicLink() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns true, if the link is either a soft link or an external link.
isSymbolicLink(HDF5ObjectType) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns true, if the objectTypeOrNull is equal to either HDF5ObjectType.SOFT_LINK or HDF5ObjectType.EXTERNAL_LINK.
isSymbolicLink(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns true if the objectPath exists and represents either a soft link or an external link and false otherwise.
isSymLink() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns if this entry is of type FileLinkType.SYMLINK.
isSymLink(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns true, if a symbolic link entry path exists in the archive.
isTestArchive() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
Returns if the archive should be tested for integrity.
isTimeDuration() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns true, if the data set is a time duration, or false otherwise.
isTimeDuration() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if the data set is a time duration, or false otherwise.
isTimeDuration(int) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if the type variant denoted by typeVariantOrdinal corresponds to a time duration.
isTimeDuration() - Method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if this type variant corresponds to a time duration.
isTimeDuration(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Returns true, if the attribute attributeName of data set objectPath is a time duration and false otherwise.
isTimeDuration(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Returns true, if the data set given by objectPath is a time duration and false otherwise.
isTimeStamp() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns true, if the data set is a time stamp, or false otherwise.
isTimeStamp() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if the data set is a time stamp, or false otherwise.
isTimeStamp() - Method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if this type variant corresponds to a time stamp.
isTimeStamp(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Returns true, if the attribute attributeName of data set objectPath is a time stamp and false otherwise.
isTimeStamp(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Returns true, if the data set given by objectPath is a time stamp and false otherwise.
isTypeVariant(HDF5DataTypeVariant) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if typeVariantOrNull is not nullNONE.
isTypeVariant(int) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if typeVariantOrdinal does not represent NONE.
isTypeVariant() - Method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns true, if this type variant is not NONE.
isUseExtendableDataTypes() - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Returns true, if the IHDF5WriterConfigurator was not configured with IHDF5WriterConfigurator.dontUseExtendableDataTypes(), that is if extendable data types are used for new data sets.
isUseVariableLengthStrings(HDF5CompoundMappingHints) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Returns whether variable-length-string types should be used if the length is not set explicitly.
isUseVariableLengthStrings() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Returns whether variable-length-string types should be used if the length is not set explicitly.
isVariableLength() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Returns true if this field should be mapped to a variable-length string.
isVariableLengthString() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns true, if this data set type is a variable-length string, or false otherwise.
isVerifyAttributes() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters
Returns if file attributes (last modification time, file ownerships and access permissions) are checked, too.
iterator() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns an Iterator over all values of this enumeration type.
iterator() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns an Iterator over all values of this enumeration type.
iterator() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
 
iterator() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
 
iterator() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 

K

keepDataSetsIfTheyExist() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
On writing a data set, keep the data set if it exists and only write the new data.
keepMDCImage() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Keep an existing metadata cache image, but do not generate an MDC if the file has none already.
knowsDataTypePath() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
knowsDataTypePath() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns whether the data type path has been determined.
knowsDataTypeVariant() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
knowsDataTypeVariant() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns whether the data type variant has been determined.

L

lastModified(long) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
lastModified(long) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewDirectoryArchiveEntry
 
lastModified(long) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
lastModified(long) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewSymLinkArchiveEntry
 
lastModifiedOK() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true if this the last modification date of this archive entry has been verified successfully (or if no verification information for the last modification date is available).
length(int) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the length of the member type to use for the mapping.
length() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
linkTypeOK() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true if this the type of this archive entry has been verified successfully (or if no verification information for the type is available).
list() - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the list of all entries in the archive recursively.
list(String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the list of all entries below fileOrDir in the archive recursively.
list(String, ListParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the list of entries below fileOrDir in the archive.
list(String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the list of all entries below fileOrDir in the archive recursively.
list(String, IArchiveEntryVisitor, ListParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the list of entries below fileOrDir in the archive.
list(String, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
list(String, IArchiveEntryVisitor, ListParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
ListArchiveException - Exception in ch.systemsx.cisd.hdf5.h5ar
Exception thrown when listing a file / directory in an archive fails.
ListArchiveException(String, String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ListArchiveException
 
ListArchiveException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ListArchiveException
 
ListArchiveException(String, RuntimeException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ListArchiveException
 
ListArchiveException(File, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ListArchiveException
 
ListArchiveTooManySymbolicLinksException - Exception in ch.systemsx.cisd.hdf5.h5ar
This exception is thrown when HDF5 detects too many symbolic links in a path.
ListArchiveTooManySymbolicLinksException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.ListArchiveTooManySymbolicLinksException
 
ListParameters - Class in ch.systemsx.cisd.hdf5.h5ar
A class that represents parameters for HDF5Archiver.list(String, ListParameters).
ListParameters.ListParametersBuilder - Class in ch.systemsx.cisd.hdf5.h5ar
A class for constructing a new list parameters object.
longDimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the dimensions of this enumeration array as a long.
longDimensions() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
Returns the number of elements.

M

main(String[]) - Static method in class ch.systemsx.cisd.hdf5.BuildAndEnvironmentInfo
Shows build and environment information on the console.
main(String[]) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverMain
 
mapping(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Adds a member mapping for memberName.
mark(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
markSupported() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
maskNull(HDF5DataTypeVariant) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns typeVariantOrNull, if it is not null, and NONE otherwise.
memberClass(Class<?>) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the member class to use for the mapping.
MINIMAL - Static variable in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
move(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Moves or renames a link in the file atomically.

N

newAnonArray(String[], String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an anonymous enumeration type.
newAnonArray(String[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an anonymous enumeration type.
newAnonArray(String[], short[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an anonymous enumeration type.
newAnonArray(String[], byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an anonymous enumeration type.
newAnonArray(Enum<T>[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an anonymous enumeration type.
newAnonMDArray(String[], MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an anonymous enumeration type.
newAnonMDArray(String[], MDIntArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an anonymous enumeration type.
newAnonMDArray(String[], MDShortArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an anonymous enumeration type.
newAnonMDArray(String[], MDByteArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an anonymous enumeration type.
newAnonMDArray(MDArray<Enum<T>>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an anonymous enumeration type.
newAnonVal(String[], String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an anonymous enumeration type.
newAnonVal(String[], int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an anonymous enumeration type.
newAnonVal(String[], short) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an anonymous enumeration type.
newAnonVal(String[], byte) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an anonymous enumeration type.
newAnonVal(Enum<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an anonymous enumeration type.
NewArchiveEntry - Class in ch.systemsx.cisd.hdf5.h5ar
A class to describe a new (yet to be created) archive entry.
NewArchiveEntry.NewDirectoryArchiveEntry - Class in ch.systemsx.cisd.hdf5.h5ar
A class to describe a new directory archive entry.
NewArchiveEntry.NewFileArchiveEntry - Class in ch.systemsx.cisd.hdf5.h5ar
A class to describe a new regular file archive entry.
NewArchiveEntry.NewSymLinkArchiveEntry - Class in ch.systemsx.cisd.hdf5.h5ar
A class to describe a new symlink archive entry.
newArray(String, String[], String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name typeName.
newArray(String, String[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name typeName.
newArray(String, String[], short[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name typeName.
newArray(String, String[], byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name typeName.
newArray(String, Enum<T>[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name typeName.
newArray(Enum<T>[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank 1) with an enumeration type of name value.class.getSimpleName().
newMDArray(String, String[], MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name typeName.
newMDArray(String, String[], MDIntArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name typeName.
newMDArray(String, String[], MDShortArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name typeName.
newMDArray(String, String[], MDByteArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name typeName.
newMDArray(String, MDArray<Enum<T>>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name typeName.
newMDArray(MDArray<Enum<T>>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value array (of rank N) with an enumeration type of name value.class.getSimpleName().
newVal(String, String[], String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with enumeration type name typeName.
newVal(String, String[], int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with enumeration type name typeName.
newVal(String, String[], short) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with enumeration type name typeName.
newVal(String, String[], byte) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with enumeration type name typeName.
newVal(Enum<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an enumeration type of name value.getClass().getSimpleName().
newVal(String, Enum<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumValueCreator
Creates a new enumeration value with an enumeration type of name typeName.
noAutoDereference() - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReaderConfigurator
Switches off automatic dereferencing of unresolved references.
noAutoDereference() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Switches off automatic dereferencing of unresolved references.
noGenerateMDCImage() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Disables generation of a metadata cache image.
nonRecursive() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Perform a non-recursive listing, i.e.
nonRecursive() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
Perform a non-recursive verification, i.e.
NONVERBOSE_VISITOR - Static variable in interface ch.systemsx.cisd.hdf5.h5ar.IArchiveEntryVisitor
 
noReadLinkTarget() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Do not read the link target of symbolic links.
noScaling() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Disables the scaling pre-filter.
noScaling() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Disables the scaling pre-filter.
nothing() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
noVariant() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
numberOfHyperRows() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
numeric() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
Reports user ids and permissions as numerical values.
numeric(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
If numeric is true, reports user ids and permissions as numerical values, if it is false, it reports user ids and permissions resolved to strings.

O

object() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns an info provider for HDF5 objects like links, groups, data sets and data types.
object() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns an info provider and handler for HDF5 objects like links, groups, data sets and data types.
offset(long...) - Method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParams
Sets the array block offset.
opaque() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for reading data sets and attributes as byte arrays ('opaque') and obtaining opaque types.
opaque() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for opaque values.
open(File) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file for writing and reading.
open(File, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file for writing and reading.
open(File, boolean, IHDF5WriterConfigurator.FileFormatVersionBounds, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file for writing and reading.
open(String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file named filePath for writing and reading.
open(String, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file named filePath for writing and reading.
open(String, boolean, IHDF5WriterConfigurator.FileFormatVersionBounds, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file named filePath for writing and reading.
open(IHDF5Writer) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file based on an HDF writer for writing and reading.
open(IHDF5Writer, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file based on an HDF writer for writing and reading.
open(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens an HDF5 file for writing and reading.
open(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens an HDF5 file named filePath for writing and reading.
open(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Opens an HDF5 file for writing and reading.
openDataSet(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Opens a data set for reading (reader and writer) or writing (writer).
openForReading(File) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file for reading.
openForReading(File, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file for reading.
openForReading(String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file named filePath for reading.
openForReading(String, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file named filePath for reading.
openForReading(IHDF5Reader, IErrorStrategy) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file based on an HDF5 reader.
openForReading(IHDF5Reader) - Static method in class ch.systemsx.cisd.hdf5.h5ar.HDF5ArchiverFactory
Opens an HDF5 archive file based on an HDF5 reader.
openForReading(File) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens an HDF5 file for reading.
openForReading(String) - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
Opens an HDF5 file named filePath for reading.
openForReading(File) - Method in interface ch.systemsx.cisd.hdf5.IHDF5Factory
Opens an HDF5 file for reading.
options() - Static method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
overwrite() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
The file will be truncated to length 0 if it already exists, that is its content will be deleted.

P

PATH - Static variable in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
path(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
path() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
performNumericConversions() - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReaderConfigurator
Will try to perform numeric conversions where appropriate if supported by the platform.
performNumericConversions() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Will try to perform numeric conversions where appropriate if supported by the platform.
permissions(short) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewDirectoryArchiveEntry
 
permissions(short) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
permissions(short) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewSymLinkArchiveEntry
 
permissions(short) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
platformSupportsNumericConversions() - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReaderConfigurator
Returns true, if this platform supports numeric conversions.
printStackTrace() - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Prints this HDF5LibraryException, the HDF-5 Library error stack, and and the Java stack trace to the standard error stream.
printStackTrace(File) - Method in exception hdf.hdf5lib.exceptions.HDF5LibraryException
Prints this HDF5LibraryException the HDF-5 Library error stack, and and the Java stack trace to the specified print stream.

R

rank() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the rank of this multi-dimensional enumeration array.
rank() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
read(String) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
read(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
read(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
read(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a Boolean value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte value from the data set objectPath.
read(String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound from the data set objectPath.
read(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound from the data set objectPath.
read(String, HDF5CompoundType<T>, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value from the data set objectPath.
read(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value from the data set objectPath.
read(String, HDF5EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference from the object objectPath, resolving the name of the object.
read(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an object reference from the object objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short value from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string from the data set objectPath.
read(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a time duration value and its unit from the data set objectPath.
read() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
read(byte[]) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
read(byte[], int, int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
readArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArray(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte array (of rank 1) from the data set objectPath.
readArray(String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArray(String, HDF5CompoundType<T>, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArray(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double array (of rank 1) from the data set objectPath.
readArray(String, HDF5EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value array from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Reads the data set objectPath as byte array.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an array of object references from the object objectPath, resolving the names of the objects.
readArray(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an array of object references from the object objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array (of rank 1) from the data set objectPath.
readArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a time duration array from the data set objectPath.
readArrayBlock(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
readArrayBlock(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArrayBlock(String, int, long, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArrayBlock(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a byte array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, HDF5CompoundType<T>, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArrayBlock(String, HDF5CompoundType<T>, int, long, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a double array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value array block from the data set objectPath.
readArrayBlock(String, HDF5EnumerationType, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value array block from the data set objectPath.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a float array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a int array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a long array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Reads a block from data set objectPath as byte array.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a block from an array (of rank 1) of object references from the data set objectPath, resolving the names of the objects.
readArrayBlock(String, int, long, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a block from an array (of rank 1) of object references from the data set objectPath.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a short array (of rank 1) from the data set objectPath.
readArrayBlock(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a int array (of rank 1) from the dataSet.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank 1) from the data set objectPath.
readArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a block of a time duration array (of rank 1) from the data set objectPath.
readArrayBlockRaw(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArrayBlockRaw(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
readArrayBlockWithOffset(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArrayBlockWithOffset(String, int, long, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readArrayBlockWithOffset(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from byte array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, HDF5CompoundType<T>, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(String, HDF5CompoundType<T>, int, long, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from double array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value array block from the data set objectPath.
readArrayBlockWithOffset(String, HDF5EnumerationType, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value array block from the data set objectPath.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from float array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from int array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from long array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Reads a block from data set objectPath as byte array.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a block from an array (of rank 1) of object references from the data set objectPath, resolving the names of the objects.
readArrayBlockWithOffset(String, int, long, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a block from an array (of rank 1) of object references from the data set objectPath.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from short array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(HDF5DataSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from int array (of rank 1) from the dataSet.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank 1) from the data set objectPath.
readArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a block of a time duration array (of rank 1) from the data set objectPath.
readArrayBlockWithOffsetRaw(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArrayBlockWithOffsetRaw(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank 1) from the data set objectPath.
readArrayRaw(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readArrayRaw(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array (of rank 1) from the data set objectPath.
readArrayToBlockWithOffset(String, byte[], int, long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
readArrayToBlockWithOffset(String, byte[], int, long, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Reads a block from data set objectPath as byte array into buffer.
readAsByteArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads the data set objectPath as byte array (of rank 1).
readAsString(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum value from the data set objectPath.
readBitField(String) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitField(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a bit field (which can be considered the equivalent to a boolean array of rank 1) from the data set objectPath and returns it as a Java BitSet.
readBitField(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a bit field (which can be considered the equivalent to a boolean array of rank 1) from the data set objectPath and returns it as a Java BitSet.
readBitFieldArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitFieldArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a bit field array (which can be considered the equivalent to a boolean array of rank 2) from the data set objectPath and returns it as a Java BitSet.
readBitFieldArrayBlock(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitFieldArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a block of a bit field array (which can be considered the equivalent to a boolean array of rank 2) from the data set objectPath and returns it as a Java BitSet.
readBitFieldArrayBlockWithOffset(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitFieldArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a block of a bit field array (which can be considered the equivalent to a boolean array of rank 2) from the data set objectPath and returns it as a Java BitSet.
readBitFieldBlock(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitFieldBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a block of a bit field (which can be considered the equivalent to a boolean array of rank 1) from the data set objectPath and returns it as a Java BitSet.
readBitFieldBlockWithOffset(String, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanReader
 
readBitFieldBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanReader
Reads a block of a bit field (which can be considered the equivalent to a boolean array of rank 1) from the data set objectPath and returns it as a Java BitSet.
readBoolean(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a Boolean value from the data set objectPath.
readBoolean() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readByte() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readChar() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readCompound(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a compound from the data set objectPath.
readCompoundArray(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a compound array (of rank 1) from the data set objectPath.
readDate(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp value from the data set objectPath and returns it as a Date.
readDate(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a date value from the data set objectPath.
readDateArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp array (of rank 1) from the data set objectPath and returns it as an array of Dates.
readDateArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a date array (of rank 1) from the data set objectPath.
readDateArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a block of a Date array (of rank 1) from the data set objectPath.
readDateArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a block of a Date array (of rank 1) from the data set objectPath.
readDateMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of Dates from the data set objectPath.
readDateMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of Dates from the data set objectPath.
readDateMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of Dates from the data set objectPath.
readDouble(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a double value from the data set objectPath.
readDouble() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readDoubleArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a double array (of rank 1) from the data set objectPath.
readDoubleMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a double matrix (array of arrays) from the data set objectPath.
readEnum(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads an Enum value from the data set objectPath.
readEnumArray(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads an Enum value array from the data set objectPath.
readEnumArrayAsString(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads an Enum array (of rank 1) from the data set objectPath.
readEnumAsString(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads an Enum value from the data set objectPath.
reader() - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReaderConfigurator
Returns an IHDF5Reader based on this configuration.
readFloat(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a float value from the data set objectPath.
readFloat() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readFloatArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a float array (of rank 1) from the data set objectPath.
readFloatMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a float matrix (array of arrays) from the data set objectPath.
readFully(byte[]) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readFully(byte[], int, int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readInt(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a int value from the data set objectPath.
readInt() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readIntArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a int array (of rank 1) from the data set objectPath.
readIntMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a int matrix (array of arrays) from the data set objectPath.
readLine() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readLinkTargets(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If readLinkTargets is true, then read the link targets of symbolic links, if it is false, do not read the link targets.
readLong(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a long value from the data set objectPath.
readLong() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readLongArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a long array (of rank 1) from the data set objectPath.
readLongMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a long matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long matrix (array of arrays) from the data set objectPath.
readMatrix(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long matrix (array of arrays) from the data set objectPath.
readMatrixBlock(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a byte matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a double matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a float matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a int matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a long matrix (array of arrays) from the data set objectPath.
readMatrixBlockWithOffset(String, int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a short matrix (array of arrays) from the data set objectPath.
readMDArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArray(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArray(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a multi-dimensional byte array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads part or all of a multi-dimensional byte array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads part or all of a multi-dimensional byte array from the data set objectPath.
readMDArray(String, HDF5CompoundType<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array from the data set objectPath.
readMDArray(String, Class<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array from the data set objectPath.
readMDArray(String, HDF5CompoundType<T>, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a compound array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a multi-dimensional double array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads part or all of a multi-dimensional double array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads part or all of a multi-dimensional double array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum array (of rank N) from the data set objectPath.
readMDArray(String, HDF5EnumerationType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads an Enum array (of rank N) from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a multi-dimensional float array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads part or all of a multi-dimensional float array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads part or all of a multi-dimensional float array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a multi-dimensional int array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads part or all of a multi-dimensional int array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads part or all of a multi-dimensional int array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a multi-dimensional long array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads part or all of a multi-dimensional long array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads part or all of a multi-dimensional long array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an array (or rank N) of object references from the object objectPath, resolving the names of the objects.
readMDArray(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads an array (or rank N) of object references from the object objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a multi-dimensional short array from the data set objectPath.
readMDArray(String, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads part or all of a multi-dimensional short array from the data set objectPath.
readMDArray(HDF5DataSet, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads part or all of a multi-dimensional short array from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array (of rank N) from the data set objectPath.
readMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a multi-dimensional array of time durations from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArrayBlock(String, int[], long[], boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArrayBlock(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a multi-dimensional byte array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a multi-dimensional byte array from the data set dataSet.
readMDArrayBlock(String, HDF5CompoundType<T>, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a block from a compound array from the data set objectPath.
readMDArrayBlock(String, HDF5CompoundType<T>, int[], long[], IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a block from a compound array from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a multi-dimensional double array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a multi-dimensional double array from the data set dataSet.
readMDArrayBlock(String, HDF5EnumerationType, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads a block from a Enum array block (of rank N) from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads a block from a Enum array block (of rank N) from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a multi-dimensional float array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a multi-dimensional float array from the data set dataSet.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a multi-dimensional int array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a multi-dimensional int array from the data set dataSet.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a multi-dimensional long array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a multi-dimensional long array from the data set dataSet.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a multi-dimensional array of object references from the data set objectPath, resolving the names of the objects.
readMDArrayBlock(String, int[], long[], boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a multi-dimensional array of object references from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a multi-dimensional short array from the data set objectPath.
readMDArrayBlock(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a multi-dimensional short array from the data set dataSet.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank N) from the data set objectPath.
readMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a multi-dimensional array of time durations from the data set objectPath.
readMDArrayBlockRaw(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArrayBlockRaw(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank N) from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArrayBlockWithOffset(String, int[], long[], boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
readMDArrayBlockWithOffset(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a multi-dimensional byte array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block from a multi-dimensional byte array from the data set dataSet.
readMDArrayBlockWithOffset(String, HDF5CompoundType<T>, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a block from a compound array from the data set objectPath.
readMDArrayBlockWithOffset(String, HDF5CompoundType<T>, int[], long[], IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundReader
Reads a block from a compound array from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a multi-dimensional double array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block from a multi-dimensional double array from the data set dataSet.
readMDArrayBlockWithOffset(String, HDF5EnumerationType, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads a block from a Enum array block (of rank N) from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumReader
Reads a block from a Enum array block (of rank N) from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a multi-dimensional float array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block from a multi-dimensional float array from the data set dataSet.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a multi-dimensional int array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block from a multi-dimensional int array from the data set dataSet.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a multi-dimensional long array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block from a multi-dimensional long array from the data set dataSet.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a multi-dimensional array of object references from the data set objectPath, resolving the names of the objects.
readMDArrayBlockWithOffset(String, int[], long[], boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Reads a multi-dimensional array of object references from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a multi-dimensional short array from the data set objectPath.
readMDArrayBlockWithOffset(HDF5DataSet, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block from a multi-dimensional short array from the data set dataSet.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank N) from the data set objectPath.
readMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a multi-dimensional array of time durations from the data set objectPath.
readMDArrayBlockWithOffsetRaw(String, int[], long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArrayBlockWithOffsetRaw(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a block of a string array (of rank N) from the data set objectPath.
readMDArrayRaw(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readMDArrayRaw(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a string array (of rank N) from the data set objectPath.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a slice of a multi-dimensional byte array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a slice of a multi-dimensional byte array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a slice of a multi-dimensional byte array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a slice of a multi-dimensional byte array from the data set dataSet.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a slice of a multi-dimensional double array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a slice of a multi-dimensional double array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a slice of a multi-dimensional double array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a slice of a multi-dimensional double array from the data set dataSet.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a slice of a multi-dimensional float array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a slice of a multi-dimensional float array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a slice of a multi-dimensional float array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a slice of a multi-dimensional float array from the data set dataSet.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a slice of a multi-dimensional int array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a slice of a multi-dimensional int array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a slice of a multi-dimensional int array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a slice of a multi-dimensional int array from the data set dataSet.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a slice of a multi-dimensional long array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a slice of a multi-dimensional long array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a slice of a multi-dimensional long array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a slice of a multi-dimensional long array from the data set dataSet.
readMDArraySlice(String, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a slice of a multi-dimensional short array from the data set objectPath.
readMDArraySlice(HDF5DataSet, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a slice of a multi-dimensional short array from the data set dataSet.
readMDArraySlice(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a slice of a multi-dimensional short array from the data set objectPath.
readMDArraySlice(HDF5DataSet, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a slice of a multi-dimensional short array from the data set dataSet.
readRaw(String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringReader
 
readRaw(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringReader
Reads a String from the data set objectPath.
readShort() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block from a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block from a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block from a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block from a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block from a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block from a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block from a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block from a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block from a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block from a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block from a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block from a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block from a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block from a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block from a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block from a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block from a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block from a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block from a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block from a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block from a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block from a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlock(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block from a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlock(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block from a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block of a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block of a multi-dimensional byte array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block of a multi-dimensional byte array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a sliced block of a multi-dimensional byte array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block of a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block of a multi-dimensional double array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block of a multi-dimensional double array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a sliced block of a multi-dimensional double array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block of a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block of a multi-dimensional float array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block of a multi-dimensional float array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a sliced block of a multi-dimensional float array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block of a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block of a multi-dimensional int array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block of a multi-dimensional int array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a sliced block of a multi-dimensional int array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block of a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block of a multi-dimensional long array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block of a multi-dimensional long array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a sliced block of a multi-dimensional long array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block of a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block of a multi-dimensional short array from the data set dataSet.
readSlicedMDArrayBlockWithOffset(String, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block of a multi-dimensional short array from the data set objectPath.
readSlicedMDArrayBlockWithOffset(HDF5DataSet, int[], long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a sliced block of a multi-dimensional short array from the data set dataSet.
readString(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a String from the data set objectPath.
readStringArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a String array (of rank 1) from the data set objectPath.
readTimeDuration(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a time duration value from the data set objectPath.
readTimeDurationArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleReader
Reads a time duration array from the data set objectPath.
readTimeStamp(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp value from the data set objectPath.
readTimeStampArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a time stamp array from the data set objectPath.
readTimeStampArrayBlock(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a block of a time stamp array (of rank 1) from the data set objectPath.
readTimeStampArrayBlockWithOffset(String, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a block of a time stamp array (of rank 1) from the data set objectPath.
readTimeStampMDArray(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of time stamps from the data set objectPath.
readTimeStampMDArrayBlock(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of time stamps from the data set objectPath.
readTimeStampMDArrayBlockWithOffset(String, int[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array of time stamps from the data set objectPath.
readToMDArrayBlockWithOffset(String, MDByteArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block of the multi-dimensional byte array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDByteArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a block of the multi-dimensional byte array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a block of the multi-dimensional array data set objectPath of type time stamp into a given array in memory.
readToMDArrayBlockWithOffset(String, MDDoubleArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block of the multi-dimensional double array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDDoubleArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a block of the multi-dimensional double array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, MDFloatArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block of the multi-dimensional float array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDFloatArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a block of the multi-dimensional float array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, MDIntArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block of the multi-dimensional int array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDIntArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a block of the multi-dimensional int array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block of the multi-dimensional long array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a block of the multi-dimensional long array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, MDShortArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block of the multi-dimensional short array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(HDF5DataSet, MDShortArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a block of the multi-dimensional short array data set objectPath into a given array in memory.
readToMDArrayBlockWithOffset(String, HDF5TimeDurationMDArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a block of the multi-dimensional long array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDByteArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a multi-dimensional byte array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDByteArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteReader
Reads a multi-dimensional byte array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDLongArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader
Reads a multi-dimensional array data set objectPath of type time stamp into a given array in memory.
readToMDArrayWithOffset(String, MDDoubleArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a multi-dimensional double array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDDoubleArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleReader
Reads a multi-dimensional double array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDFloatArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a multi-dimensional float array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDFloatArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatReader
Reads a multi-dimensional float array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDIntArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a multi-dimensional int array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDIntArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntReader
Reads a multi-dimensional int array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDLongArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a multi-dimensional long array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDLongArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongReader
Reads a multi-dimensional long array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, MDShortArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a multi-dimensional short array data set objectPath into a given array in memory.
readToMDArrayWithOffset(HDF5DataSet, MDShortArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortReader
Reads a multi-dimensional short array data set objectPath into a given array in memory.
readToMDArrayWithOffset(String, HDF5TimeDurationMDArray, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Reads a multi-dimensional array of time durations from the data set objectPath into a given array in memory.
readUnsignedByte() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readUnsignedShort() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
readUTF() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
recursive(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If recursive is true, perform a recursive listing, if it is false, perform a non-recursive listing, i.e.
recursive(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
If recursive is true, perform a recursive verification, if it is false, perform a non-recursive listing, i.e.
reference() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to a reference type.
reference(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to a reference type, if reference is true.
reference() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for object references.
reference() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full reader for object references.
removeFlushable(Flushable) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FileLevelReadWriteHandler
Removes a Flushable from the set of flushables.
reset() - Static method in class ch.systemsx.cisd.hdf5.HDF5Factory
This function flushes all data to disk, closes all file identifiers, and cleans up all memory used by the library.
reset() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
resolvePath(String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceReader
 
resolvePath(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceReader
Resolves the path of a reference which has been read without name resolution.
resolveSymbolicLinks() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Resolve symbolic links to their link targets.
resolveSymbolicLinks(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If resolveSymbolicLinks is true, resolve symbolic links to their link targets, if it is false, do not resolve symbolic links to their link targets.

S

scalingFactor(byte) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Sets the scaling factor for an integer scaling pre-filter.
scalingFactor(byte) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Sets the scaling factor for an integer scaling pre-filter.
seal() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy
Seal the strategy.
seek(long) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
set(IHDF5Factory) - Static method in class ch.systemsx.cisd.hdf5.HDF5FactoryProvider
Sets the IHDF5Factory.
set(long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
set(long, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
set(long, int, int, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
set(long, int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
setArrayAttr(String, String, Date[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setArrayAttr(String, String, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setArrayAttr(String, String, String[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
setArrayAttr(String, String, String[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setArrayAttr(String, String, String[], int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setArrayAttr(String, String, HDF5TimeDurationArray) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
setArrayAttr(String, String, byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Set a byte[] attribute on the referenced object.
setArrayAttr(String, String, HDF5CompoundType<T>, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute array (of rank 1) to the referenced object.
setArrayAttr(String, String, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute array (of rank 1) to the referenced object.
setArrayAttr(String, String, Date[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Set a date array value as attribute on the referenced object.
setArrayAttr(String, String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Set a time stamp array value as attribute on the referenced object.
setArrayAttr(String, String, double[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Set a double[] attribute on the referenced object.
setArrayAttr(String, String, HDF5EnumerationValueArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Sets an enum array attribute (of rank 1) to the referenced object.
setArrayAttr(String, String, float[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Set a float[] attribute on the referenced object.
setArrayAttr(String, String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Set a int[] attribute on the referenced object.
setArrayAttr(String, String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Set a long[] attribute on the referenced object.
setArrayAttr(String, String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Sets a 1D object reference array attribute to referenced objects.
setArrayAttr(String, String, short[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Set a short[] attribute on the referenced object.
setArrayAttr(String, String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a string array attribute on the referenced object.
setArrayAttr(String, String, String[], int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a string array attribute on the referenced object.
setArrayAttr(String, String, HDF5TimeDurationArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Set a time duration array value as attribute on the referenced object.
setAttr(String, String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
setAttr(String, String, long) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setAttr(String, String, Date) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setAttr(String, String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
setAttr(String, String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setAttr(String, String, String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setAttr(String, String, long, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
setAttr(String, String, HDF5TimeDuration) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
setAttr(String, String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Sets a boolean attribute to the referenced object.
setAttr(String, String, byte) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Set a byte attribute on the referenced object.
setAttr(String, String, HDF5CompoundType<T>, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute to the referenced object.
setAttr(String, String, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute to the referenced object.
setAttr(String, String, Date) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Set a date value as attribute on the referenced object.
setAttr(String, String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Set a time stamp value as attribute on the referenced object.
setAttr(String, String, double) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Set a double attribute on the referenced object.
setAttr(String, String, HDF5EnumerationValue) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Sets an enum attribute to the referenced object.
setAttr(String, String, Enum<?>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Sets an enum attribute to the referenced object.
setAttr(String, String, float) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Set a float attribute on the referenced object.
setAttr(String, String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Set a int attribute on the referenced object.
setAttr(String, String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Set a long attribute on the referenced object.
setAttr(String, String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Sets an object reference attribute to the referenced object.
setAttr(String, String, short) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Set a short attribute on the referenced object.
setAttr(String, String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a string attribute on the referenced object.
setAttr(String, String, String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a string attribute on the referenced object.
setAttr(String, String, long, HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Set a time duration value as attribute on the referenced object.
setAttr(String, String, HDF5TimeDuration) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Set a time duration value as attribute on the referenced object.
setAttrVL(String, String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setAttrVL(String, String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a string attribute with variable length on the referenced object.
setByteOrder(ByteOrder) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
setDataSetDimensions(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Sets the data set size of a multi-dimensional data set to newDimensions.
setDataSetSize(String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Sets the data set size of a one-dimensional data set to newSize.
setEnumReturnType(HDF5CompoundMappingHints.EnumReturnType) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Sets the desired return type for enums.
setLength(long) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
setMatrixAttr(String, String, byte[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Set a byte[][] attribute on the referenced object.
setMatrixAttr(String, String, double[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Set a double[][] attribute on the referenced object.
setMatrixAttr(String, String, float[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Set a float[][] attribute on the referenced object.
setMatrixAttr(String, String, int[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Set a int[][] attribute on the referenced object.
setMatrixAttr(String, String, long[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Set a long[][] attribute on the referenced object.
setMatrixAttr(String, String, short[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Set a short[][] attribute on the referenced object.
setMDArrayAttr(String, String, MDLongArray) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setMDArrayAttr(String, String, MDArray<Date>) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
setMDArrayAttr(String, String, MDArray<String>) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
setMDArrayAttr(String, String, MDArray<String>) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setMDArrayAttr(String, String, MDArray<String>, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
setMDArrayAttr(String, String, HDF5TimeDurationMDArray) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
setMDArrayAttr(String, String, MDByteArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Set a multi-dimensional code>byte attribute on the referenced object.
setMDArrayAttr(String, String, HDF5CompoundType<T>, MDArray<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute array (of rank N) to the referenced object.
setMDArrayAttr(String, String, MDArray<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Sets a compound attribute array (of rank N) to the referenced object.
setMDArrayAttr(String, String, MDLongArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Sets a multi-dimensional timestamp array attribute on the referenced object.
setMDArrayAttr(String, String, MDArray<Date>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Sets a multi-dimensional timestamp array attribute on the referenced object.
setMDArrayAttr(String, String, MDDoubleArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Set a multi-dimensional code>double attribute on the referenced object.
setMDArrayAttr(String, String, HDF5EnumerationValueMDArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Sets an enum array (of rank N) attribute to the referenced object.
setMDArrayAttr(String, String, MDFloatArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Set a multi-dimensional code>float attribute on the referenced object.
setMDArrayAttr(String, String, MDIntArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Set a multi-dimensional code>int attribute on the referenced object.
setMDArrayAttr(String, String, MDLongArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Set a multi-dimensional code>long attribute on the referenced object.
setMDArrayAttr(String, String, MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Sets an object reference array attribute to referenced objects.
setMDArrayAttr(String, String, MDShortArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Set a multi-dimensional code>short attribute on the referenced object.
setMDArrayAttr(String, String, MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a multi-dimensional string array attribute on the referenced object.
setMDArrayAttr(String, String, MDArray<String>, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Sets a multi-dimensional string array attribute on the referenced object.
setMDArrayAttr(String, String, HDF5TimeDurationMDArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Set a multi-dimensional time duration array value as attribute on the referenced object.
setToObject(Long, int...) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
setToObject(Long, int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
setTypeVariant(String, HDF5DataTypeVariant) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Sets a typeVariant of object objectPath.
setTypeVariant(String, String, HDF5DataTypeVariant) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadWriteInfoProviderHandler
Sets a typeVariant of attribute attributeName of object objectPath.
setUseVariableLengthStrings(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Sets whether variable-length-string types should be used if the length is not set explicitly.
shuffleBeforeDeflate(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Sets a shuffling pre-filter for deflation if shuffleBeforeDeflate==true and disables it if shuffleBeforeDeflate==false.
shuffleBeforeDeflate() - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Sets a shuffling pre-filter for deflation.
shuffleBeforeDeflate(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Sets a shuffling pre-filter for deflation if shuffleBeforeDeflate==true and disables it if shuffleBeforeDeflate==false.
shuffleBeforeDeflate() - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Sets a shuffling pre-filter for deflation.
shuffleBeforeDeflate(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Sets a shuffling pre-filter for deflation if shuffleBeforeDeflate==true and disables it if shuffleBeforeDeflate==false.
shuffleBeforeDeflate() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Sets a shuffling pre-filter for deflation.
signed(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Sets that the integer values should be stored as signed integers if signed==true and as unsigned integers if signed==false.
size() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the number of elements of this enumeration array.
size(int) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the extent of this enum array along its dim-th axis.
size(int) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
size() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
sizeOK() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns true if this the size of this archive entry has been verified successfully (or if no verification information for the size is available).
skip(long) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
skipBytes(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
slice(long...) - Method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParams
Sets an array slice.
slice(IndexMap) - Method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParams
Sets an array slice.
slice(long...) - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that reads an array slice.
slice(IndexMap) - Static method in class ch.systemsx.cisd.hdf5.HDF5ArrayBlockParamsBuilder
Creates a parameter that reads or writes an array slice.
storageLayout(HDF5StorageLayout) - Method in class ch.systemsx.cisd.hdf5.HDF5FloatStorageFeatures.HDF5FloatStorageFeatureBuilder
Set the layout for the dataset.
storageLayout(HDF5StorageLayout) - Method in class ch.systemsx.cisd.hdf5.HDF5GenericStorageFeatures.HDF5GenericStorageFeatureBuilder
Set the layout for the dataset.
storageLayout(HDF5StorageLayout) - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Set the layout for the dataset.
string() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for strings.
string() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for strings.
supportsMDCCache() - Method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersion
 
suppressDirectoryEntries() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Suppress directory entries from being listed.
suppressDirectoryEntries(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If suppressDirectoryEntries is true, suppress directory entries from being listed.
symlink(String, String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
symlink(String, String, String) - Static method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
synchronize() - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
syncMode(IHDF5WriterConfigurator.SyncMode) - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator

T

test() - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Performs an integrity of the archive.
TEST - Static variable in class ch.systemsx.cisd.hdf5.h5ar.ListParameters
The list parameters for testing the archive integrity: recursive tests the integrity of the archive does not suppress directory entries includes the top-level directory reads symbolic link targets does not resolve symbolic links does not follow symbolic links
testArchive() - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
Perform an integrity test of the archive, i.e.
testArchive(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.ListParameters.ListParametersBuilder
If testArchive is true, perform an integrity test of the archive, i.e.
time() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for date and times.
time() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for date and times.
toEnumArray(Class<T>) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the values for all elements of this array as Enums of type enumClass.
toEnumArray(Class<T>) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the values for all elements of this array as an enum array with enums of type enumClass.
toHouseKeepingPath(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Creates and returns an internal (house-keeping) version of objectPath.
toInt16(int) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value as int16.
toInt32(long) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value as int32.
toInt64(BigInteger) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value as int64.
toInt8(int) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value to int8.
toMatrix() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
toString() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValue
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDuration
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationArray
 
toString() - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationMDArray
 
toStringArray() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueArray
Returns the string values for all elements of this array.
toStringArray() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationValueMDArray
Returns the string values for all elements of this array.
toUint16(short) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value to uint16.
toUint32(int) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value to uint32.
toUint64(long) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value to uint64.
toUint8(byte) - Static method in class ch.systemsx.cisd.hdf5.UnsignedIntUtils
Converts value to uint8.
tryGetChunkSizes() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the chunk size in each array dimension of the data set, or null, if the data set is not of HDF5StorageLayout.CHUNKED.
tryGetDataTypePath() - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
Returns the data type path of this type, or null, if this type is not a comitted data type.
tryGetDataTypePath() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
If this is a committed (named) data type and HDF5DataTypeInformation.knowsDataTypePath() == true, return the path of the data type.
tryGetDataTypePath(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the path of the data type of the data set objectPath, or null , if this data set is not of a named data type.
tryGetDataTypePath(HDF5DataType) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the path of the data type, or null, if type is not a named data type.
tryGetEntry(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns an archive entry for path, or null, if the archive has no archive entry for this path.
tryGetEnumType(String) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Returns the HDF5EnumerationType for the given memberName, or null, if no mapping is available for this member.
tryGetEnumValues() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberInformation
Returns the values of the enumeration type of this compound member, if it is of an enumeration type and null otherwise.
tryGetErrorLine() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the error line saved for this archive entry, or null, if no error line is available.
tryGetExternalLinkFilename() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns the filename of an external link, or null, if this link does not exist or is not an external link.
tryGetExternalLinkFilename(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the filename of an external link, or null, if this link does not exist or is not an external link.
tryGetExternalLinkTarget() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns the external link target of this link, or null, if this link does not exist or is not an external link.
tryGetExternalLinkTarget(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the external link target of this link, or null, if this link does not exist or is not an external link.
tryGetIndexForValue(String) - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns the ordinal value for the given string value, if value is a member of the enumeration, and null otherwise.
tryGetIndexForValue(String) - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns the ordinal value for the given string value, if value is a member of the enumeration, and null otherwise.
tryGetJavaType() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns an appropriate Java type, or null, if this HDF5 type has no appropriate Java type.
tryGetMemberClass() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
 
tryGetName() - Method in class ch.systemsx.cisd.hdf5.EnumerationType
Returns the name of this type, if it exists, or null otherwise.
tryGetName() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundType
 
tryGetName() - Method in class ch.systemsx.cisd.hdf5.HDF5DataType
Returns a name for this type, or null if this type has no name.
tryGetName() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the name of this datatype, if it is a committed data type.
tryGetName() - Method in class ch.systemsx.cisd.hdf5.HDF5EnumerationType
Returns the name of this type, if it exists and null otherwise.
tryGetName() - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueType
 
tryGetOpaqueTag() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the tag of an opaque data type, or null, if this data type is not opaque.
tryGetOpaqueTag(String) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
tryGetOpaqueTag(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Returns the tag of the opaque data type associated with objectPath, or null, if objectPath is not of an opaque data type (i.e.
tryGetOpaqueType(String) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueReader
 
tryGetOpaqueType(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueReader
Returns the opaque data type or null, if objectPath is not of such a data type.
tryGetResolvedEntry(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Returns the archive entry for path.
tryGetSymbolicLinkTarget() - Method in class ch.systemsx.cisd.hdf5.HDF5LinkInformation
Returns the symbolic link target of this link, or null, if this link does not exist or is not a symbolic link.
tryGetSymbolicLinkTarget(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the target of the symbolic link that objectPath points to, or null, if objectPath is not a symbolic link.
tryGetTimeUnit() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the time unit of the data set, if the data set is a time duration, or null otherwise.
tryGetTimeUnit() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the time unit of the data set, if the data set is a time duration, or null otherwise.
tryGetTimeUnit() - Method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns the time unit for this type variant or null, if this type variant is not a time unit.
tryGetTimeUnit(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Returns the time unit, if the attribute given by attributeName of object objectPath is a time duration and null otherwise.
tryGetTimeUnit(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationReader
Returns the time unit, if the data set given by objectPath is a time duration and null otherwise.
tryGetTypeVariant() - Method in class ch.systemsx.cisd.hdf5.HDF5DataSetInformation
Returns the data type variant of this data set, or null, if this data set is not tagged with a type variant.
tryGetTypeVariant() - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation
Returns the HDF5DataTypeVariant, or null, if this type has no variant or HDF5DataTypeInformation.knowsDataTypeVariant() == false.
tryGetTypeVariant(String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the data type variant of objectPath, or null, if no type variant is defined for this objectPath.
tryGetTypeVariant(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ObjectReadOnlyInfoProviderHandler
Returns the data type variant of attributeName of object objectPath, or null, if no type variant is defined for this objectPath.
tryGetVerifiedLinkType() - Method in class ch.systemsx.cisd.hdf5.h5ar.ArchiveEntry
Returns the verified type of this entry, or null, if no verification has been performed on this entry.
tryResolveLink(ArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveInfoProvider
Resolves the symbolic link of entry, if any.
typeVariant(HDF5DataTypeVariant) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets the data type variant to use for the mapping.

U

uid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewDirectoryArchiveEntry
 
uid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewFileArchiveEntry
 
uid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry.NewSymLinkArchiveEntry
 
uid(int) - Method in class ch.systemsx.cisd.hdf5.h5ar.NewArchiveEntry
 
uint16() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for unsigned short / uint16.
uint16() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for unsigned short / uint16.
uint32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for unsigned int / uint32.
uint32() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for unsigned int / uint32.
uint64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for unsigned long / uint64.
uint64() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for unsigned long / uint64.
uint8() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Reader
Returns the full reader for unsigned byte / uint8.
uint8() - Method in interface ch.systemsx.cisd.hdf5.IHDF5Writer
Returns the full writer for unsigned byte / uint8.
UnarchivingException - Exception in ch.systemsx.cisd.hdf5.h5ar
Exception thrown when unarchiving a file / directory fails.
UnarchivingException(String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
UnarchivingException(String, String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
UnarchivingException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
UnarchivingException(String, RuntimeException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
UnarchivingException(File, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
UnarchivingException(File, IOExceptionUnchecked) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.UnarchivingException
 
unmaskNone(HDF5DataTypeVariant) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns typeVariantOrNull, if it is not NONE, and null otherwise.
unsigned() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to an unsigned type.
unsigned(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to an unsigned type, if unsigned is true.
unsigned() - Method in class ch.systemsx.cisd.hdf5.HDF5IntStorageFeatures.HDF5IntStorageFeatureBuilder
Sets that the integer values should be stored as unsigned integers.
UnsignedIntUtils - Class in ch.systemsx.cisd.hdf5
Utilities for converting signed integers to unsigned integers and vice versa.
UnsignedIntUtils() - Constructor for class ch.systemsx.cisd.hdf5.UnsignedIntUtils
 
useSimpleDataSpaceForAttributes() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Use simple data spaces for attributes.
useUTF8CharacterEncoding() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Sets UTF8 character encoding for all paths and all strings in this file.
useVariableLengthStrings() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Sets that variable-length-string types should be used if the length is not set explicitly.
useVariableLengthStrings(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints
Sets whether variable-length-string types should be used if the length is not set explicitly.

V

valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.CharacterEncoding
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.h5ar.ArchiveEntryCompleteness
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy.CompressionStrategy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints.EnumReturnType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataClass
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5EnumerationType.EnumStorageForm
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5StorageLayout
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersion
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.SyncMode
Returns the enum constant of this type with the specified name.
values() - Static method in enum ch.systemsx.cisd.hdf5.CharacterEncoding
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.h5ar.ArchiveEntryCompleteness
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategy.CompressionStrategy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5CompoundMappingHints.EnumReturnType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataClass
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5DataTypeVariant
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5EnumerationType.EnumStorageForm
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5ObjectType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5StorageLayout
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.HDF5TimeUnit
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersion
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.FileFormatVersionBounds
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator.SyncMode
Returns an array containing the constants of this enum type, in the order they are declared.
variableLength() - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to a variable-length type.
variableLength(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5CompoundMemberMapping
Sets this field to a variable-length type, if variableLength is true.
variant(boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5DataTypeInformation.DataTypeInfoOptions
 
verifyAgainstFilesystem(String, File, String, IArchiveEntryVisitor, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, String, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, String, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5Archiver
 
verifyAgainstFilesystem(String, File, String, IArchiveEntryVisitor, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
verifyAgainstFilesystem(String, File, String, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(String, File, IArchiveEntryVisitor) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(String, File, String, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
verifyAgainstFilesystem(String, File, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
verifyAgainstFilesystem(String, File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
verifyAgainstFilesystem(File) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(File, VerifyParameters) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the complete archive against the filesystem.
verifyAgainstFilesystem(String, File, String) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IHDF5ArchiveReader
Verifies the content of the archive against the filesystem.
VerifyArchiveException - Exception in ch.systemsx.cisd.hdf5.h5ar
Exception thrown when verifying a file / directory in an archive against the file system.
VerifyArchiveException(String, String) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.VerifyArchiveException
 
VerifyArchiveException(String, HDF5Exception) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.VerifyArchiveException
 
VerifyArchiveException(String, RuntimeException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.VerifyArchiveException
 
VerifyArchiveException(File, IOException) - Constructor for exception ch.systemsx.cisd.hdf5.h5ar.VerifyArchiveException
 
verifyAttributes() - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
Verifies also last modification time, file ownership and access permissions.
verifyAttributes(boolean) - Method in class ch.systemsx.cisd.hdf5.h5ar.VerifyParameters.VerifyParametersBuilder
If verifyAttributes is true, verifies also last modification time, file ownership and access permissions, if it is false, check only the types and content of entries.
VerifyParameters - Class in ch.systemsx.cisd.hdf5.h5ar
A class that represents parameters for ) .
VerifyParameters.VerifyParametersBuilder - Class in ch.systemsx.cisd.hdf5.h5ar
A class for constructing a new verify parameters object.
visit(ArchiveEntry) - Method in interface ch.systemsx.cisd.hdf5.h5ar.IArchiveEntryVisitor
Called for each archive entry which is visited.

W

write(String, boolean) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
write(String, long) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
write(String, Date) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
write(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
write(String, String, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
write(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
write(String, String, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
write(String, String, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
write(String, long, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
write(String, HDF5TimeDuration) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
write(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out a boolean value.
write(String, byte) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte value.
write(String, HDF5CompoundType<T>, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a compound value of type given in data.
write(String, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a compound value.
write(String, HDF5CompoundType<T>, T, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
write(String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a time stamp value.
write(String, Date) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a time stamp value provided as a Date.
write(String, double) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double value.
write(String, HDF5EnumerationValue) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an enum value.
write(String, Enum<?>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an enum value.
write(String, float) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float value.
write(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int value.
write(String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long value.
write(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes an object reference to the referenced object.
write(String, short) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short value.
write(String, String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String with a fixed maximal length.
write(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String with a fixed maximal length (which is the length of the string data).
write(String, String, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String with a fixed maximal length.
write(String, String, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String with a fixed maximal length.
write(String, long, HDF5TimeUnit) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a time duration value.
write(String, HDF5TimeDuration) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a time duration value.
write(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
write(byte[]) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
write(byte[], int, int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeArray(String, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArray(String, long[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArray(String, Date[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArray(String, Date[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArray(String, String, byte[]) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
writeArray(String, String, byte[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
writeArray(String, String[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeArray(String, String[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeArray(String, String[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArray(String, String[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArray(String, String[], int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArray(String, String[], int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArray(String, HDF5TimeDurationArray) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeArray(String, HDF5TimeDurationArray, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeArray(String, byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte array (of rank 1).
writeArray(String, byte[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte array (of rank 1).
writeArray(String, byte[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte array (of rank 1).
writeArray(String, HDF5CompoundType<T>, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
writeArray(String, HDF5CompoundType<T>, T[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
writeArray(String, HDF5CompoundType<T>, T[], HDF5GenericStorageFeatures, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
writeArray(String, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
writeArray(String, T[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank 1) of compound values.
writeArray(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a time stamp array (of rank 1).
writeArray(String, long[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a time stamp array (of rank 1).
writeArray(String, Date[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a Date array (of rank 1).
writeArray(String, Date[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a Date array (of rank 1).
writeArray(String, double[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double array (of rank 1).
writeArray(String, double[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double array (of rank 1).
writeArray(String, double[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double array (of rank 1).
writeArray(String, HDF5EnumerationValueArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an array of enum values.
writeArray(String, HDF5EnumerationValueArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an array of enum values.
writeArray(String, float[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float array (of rank 1).
writeArray(String, float[], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float array (of rank 1).
writeArray(String, float[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float array (of rank 1).
writeArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int array (of rank 1).
writeArray(String, int[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int array (of rank 1).
writeArray(String, int[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int array (of rank 1).
writeArray(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long array (of rank 1).
writeArray(String, long[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long array (of rank 1).
writeArray(String, long[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long array (of rank 1).
writeArray(String, String, byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Writes out an opaque data type described by tag and defined by a byte array (of rank 1).
writeArray(String, String, byte[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Writes out an opaque data type described by tag and defined by a byte array (of rank 1).
writeArray(String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes an array (of rank 1) of object references.
writeArray(String, String[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes an array (of rank 1) of object references.
writeArray(String, short[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short array (of rank 1).
writeArray(String, short[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short array (of rank 1).
writeArray(String, short[], HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short array (of rank 1).
writeArray(String, String[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank 1).
writeArray(String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank 1).
writeArray(String, String[], int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank 1).
writeArray(String, String[], int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank 1).
writeArray(String, HDF5TimeDurationArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a time duration array (of rank 1).
writeArray(String, HDF5TimeDurationArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a time duration array (of rank 1).
writeArrayBlock(String, long[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArrayBlock(String, HDF5OpaqueType, byte[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
writeArrayBlock(String, String[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeArrayBlock(String, String[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArrayBlock(String, HDF5TimeDurationArray, long) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeArrayBlock(String, byte[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte array (of rank 1).
writeArrayBlock(HDF5DataSet, byte[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte array (of rank 1).
writeArrayBlock(String, HDF5CompoundType<T>, T[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block blockNumber of an array (of rank 1) of compound values.
writeArrayBlock(String, HDF5CompoundType<T>, T[], long, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block blockNumber of an array (of rank 1) of compound values.
writeArrayBlock(String, long[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a time stamp array (which is stored as a long array of rank 1).
writeArrayBlock(String, double[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double array (of rank 1).
writeArrayBlock(HDF5DataSet, double[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double array (of rank 1).
writeArrayBlock(String, HDF5EnumerationValueArray, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out a block of an enum array (of rank 1).
writeArrayBlock(String, float[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float array (of rank 1).
writeArrayBlock(HDF5DataSet, float[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float array (of rank 1).
writeArrayBlock(String, int[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int array (of rank 1).
writeArrayBlock(HDF5DataSet, int[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int array (of rank 1).
writeArrayBlock(String, long[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long array (of rank 1).
writeArrayBlock(HDF5DataSet, long[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long array (of rank 1).
writeArrayBlock(String, HDF5OpaqueType, byte[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Writes out a block of an opaque data type represented by a byte array (of rank 1).
writeArrayBlock(String, String[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes out a block of an array (of rank 1) of object references.
writeArrayBlock(String, short[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short array (of rank 1).
writeArrayBlock(HDF5DataSet, short[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short array (of rank 1).
writeArrayBlock(String, String[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a block of a String array (of rank 1).
writeArrayBlock(String, HDF5TimeDurationArray, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a block of a time duration array.
writeArrayBlockWithOffset(String, long[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeArrayBlockWithOffset(String, HDF5OpaqueType, byte[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5OpaqueWriter
 
writeArrayBlockWithOffset(String, String[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeArrayBlockWithOffset(String, String[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArrayBlockWithOffset(String, HDF5TimeDurationArray, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeArrayBlockWithOffset(String, byte[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, byte[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte array (of rank 1).
writeArrayBlockWithOffset(String, HDF5CompoundType<T>, T[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank 1) of compound values with given offset.
writeArrayBlockWithOffset(String, HDF5CompoundType<T>, T[], long, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank 1) of compound values with given offset.
writeArrayBlockWithOffset(String, long[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a time stamp array (which is stored as a long array of rank 1).
writeArrayBlockWithOffset(String, double[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, double[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double array (of rank 1).
writeArrayBlockWithOffset(String, HDF5EnumerationValueArray, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out a block of an enum array (of rank 1).
writeArrayBlockWithOffset(String, float[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, float[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float array (of rank 1).
writeArrayBlockWithOffset(String, int[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, int[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int array (of rank 1).
writeArrayBlockWithOffset(String, long[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, long[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long array (of rank 1).
writeArrayBlockWithOffset(String, HDF5OpaqueType, byte[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5OpaqueWriter
Writes out a block of an opaque data type represented by a byte array (of rank 1).
writeArrayBlockWithOffset(String, String[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes out a block of an array (of rank 1) of object references.
writeArrayBlockWithOffset(String, short[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short array (of rank 1).
writeArrayBlockWithOffset(HDF5DataSet, short[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short array (of rank 1).
writeArrayBlockWithOffset(String, String[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a block of a String array (of rank 1).
writeArrayBlockWithOffset(String, HDF5TimeDurationArray, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a block of a time duration array.
writeArrayVL(String, String[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArrayVL(String, String[], HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeArrayVL(String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String[] where each String of the array has a variable maximal length.
writeArrayVL(String, String[], HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String[] where each String of the array has a variable maximal length.
writeBitField(String, BitSet) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitField(String, BitSet, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitField(String, BitSet) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out a bit field ((which can be considered the equivalent to a boolean array of rank 1), provided as a Java BitSet.
writeBitField(String, BitSet, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out a bit field ((which can be considered the equivalent to a boolean array of rank 1), provided as a Java BitSet.
writeBitField(String, BitSet) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a bit field ((which can be considered the equivalent to a boolean array of rank 1), provided as a Java BitSet.
writeBitFieldArray(String, BitSet[]) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArray(String, BitSet[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArray(String, BitSet[], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldArray(String, BitSet[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldArrayBlock(String, BitSet[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArrayBlock(String, BitSet[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArrayBlock(String, BitSet[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldArrayBlock(String, BitSet[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldArrayBlockWithOffset(String, BitSet[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArrayBlockWithOffset(String, BitSet[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldArrayBlockWithOffset(String, BitSet[], int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldArrayBlockWithOffset(String, BitSet[], long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out an array of bit fields (which can be considered the equivalent to a boolean array of rank 2), provided as a Java array of BitSets.
writeBitFieldBlock(String, BitSet, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldBlock(String, BitSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out a block of a bit field (of rank 1).
writeBitFieldBlockWithOffset(String, BitSet, int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5BooleanWriter
 
writeBitFieldBlockWithOffset(String, BitSet, int, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5BooleanWriter
Writes out a block of a long array (of rank 1).
writeBoolean(String, boolean) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a boolean value.
writeBoolean(boolean) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeByte(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeByteArray(String, byte[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a byte array (of rank 1).
writeBytes(String) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeChar(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeChars(String) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeCompound(String, T) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a compound value.
writeCompoundArray(String, T[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out an array (of rank 1) of compound values.
writeDate(String, Date) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a time stamp value provided as a Date.
writeDateArray(String, Date[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a Date array (of rank 1).
writeDouble(String, double) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a double value.
writeDouble(double) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeDoubleArray(String, double[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a double array (of rank 1).
writeDoubleMatrix(String, double[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a double matrix (array of rank 2).
writeEnum(String, Enum<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out an enum value.
writeEnumArray(String, Enum<T>[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out an array of enum values.
writeEnumArray(String, String[], String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out an array of enum values.
writeFloat(String, float) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a float value.
writeFloat(float) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeFloatArray(String, float[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a float array (of rank 1).
writeFloatMatrix(String, float[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a float matrix (array of rank 2).
writeInt(String, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a int value.
writeInt(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeIntArray(String, int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a int array (of rank 1).
writeIntMatrix(String, int[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a int matrix (array of rank 2).
writeLong(String, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a long value.
writeLong(long) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeLongArray(String, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a long array (of rank 1).
writeLongMatrix(String, long[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a long matrix (array of rank 2).
writeMatrix(String, byte[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte matrix (array of rank 2).
writeMatrix(String, byte[][], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a byte matrix (array of rank 2).
writeMatrix(String, double[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double matrix (array of rank 2).
writeMatrix(String, double[][], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a double matrix (array of rank 2).
writeMatrix(String, float[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float matrix (array of rank 2).
writeMatrix(String, float[][], HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a float matrix (array of rank 2).
writeMatrix(String, int[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int matrix (array of rank 2).
writeMatrix(String, int[][], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a int matrix (array of rank 2).
writeMatrix(String, long[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long matrix (array of rank 2).
writeMatrix(String, long[][], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a long matrix (array of rank 2).
writeMatrix(String, short[][]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short matrix (array of rank 2).
writeMatrix(String, short[][], HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a short matrix (array of rank 2).
writeMatrixBlock(String, byte[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte matrix (array of rank 2).
writeMatrixBlock(String, double[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double matrix (array of rank 2).
writeMatrixBlock(String, float[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float matrix (array of rank 2).
writeMatrixBlock(String, int[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int matrix (array of rank 2).
writeMatrixBlock(String, long[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long matrix (array of rank 2).
writeMatrixBlock(String, short[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short matrix (array of rank 2).
writeMatrixBlockWithOffset(String, byte[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte matrix (array of rank 2).
writeMatrixBlockWithOffset(String, byte[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a byte matrix (array of rank 2).
writeMatrixBlockWithOffset(String, double[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double matrix (array of rank 2).
writeMatrixBlockWithOffset(String, double[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a double matrix (array of rank 2).
writeMatrixBlockWithOffset(String, float[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float matrix (array of rank 2).
writeMatrixBlockWithOffset(String, float[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a float matrix (array of rank 2).
writeMatrixBlockWithOffset(String, int[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int matrix (array of rank 2).
writeMatrixBlockWithOffset(String, int[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a int matrix (array of rank 2).
writeMatrixBlockWithOffset(String, long[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long matrix (array of rank 2).
writeMatrixBlockWithOffset(String, long[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a long matrix (array of rank 2).
writeMatrixBlockWithOffset(String, short[][], long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short matrix (array of rank 2).
writeMatrixBlockWithOffset(String, short[][], int, int, long, long) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a short matrix (array of rank 2).
writeMDArray(String, MDLongArray, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArray(String, MDArray<Date>, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArray(String, MDArray<String>) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeMDArray(String, MDArray<String>, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeMDArray(String, MDArray<String>) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArray(String, MDArray<String>, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArray(String, MDArray<String>, int) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArray(String, MDArray<String>, int, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArray(String, HDF5TimeDurationMDArray, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeMDArray(String, HDF5TimeDurationMDArray) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeMDArray(String, MDByteArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a multi-dimensional byte array.
writeMDArray(String, MDByteArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a multi-dimensional byte array.
writeMDArray(HDF5DataSet, MDByteArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block or a slice of a multi-dimensional byte array.
writeMDArray(String, MDByteArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a multi-dimensional byte array.
writeMDArray(String, HDF5CompoundType<T>, MDArray<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank N) of compound values.
writeMDArray(String, HDF5CompoundType<T>, MDArray<T>, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank N) of compound values.
writeMDArray(String, HDF5CompoundType<T>, MDArray<T>, HDF5GenericStorageFeatures, IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank N) of compound values.
writeMDArray(String, MDArray<T>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank N) of compound values.
writeMDArray(String, MDArray<T>, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out an array (of rank N) of compound values.
writeMDArray(String, MDLongArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a multi-dimensional array of time stamps.
writeMDArray(String, MDArray<Date>, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a multi-dimensional array of dates.
writeMDArray(String, MDDoubleArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a multi-dimensional double array.
writeMDArray(String, MDDoubleArray, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a multi-dimensional double array.
writeMDArray(HDF5DataSet, MDDoubleArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block or a slice of a multi-dimensional double array.
writeMDArray(String, MDDoubleArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a multi-dimensional double array.
writeMDArray(String, HDF5EnumerationValueMDArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an array (of rank N) of Enum values.
writeMDArray(String, HDF5EnumerationValueMDArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out an array (of rank N) of Enum values.
writeMDArray(String, MDFloatArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a multi-dimensional float array.
writeMDArray(String, MDFloatArray, HDF5FloatStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a multi-dimensional float array.
writeMDArray(HDF5DataSet, MDFloatArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block or a slice of a multi-dimensional float array.
writeMDArray(String, MDFloatArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a multi-dimensional float array.
writeMDArray(String, MDIntArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a multi-dimensional int array.
writeMDArray(String, MDIntArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a multi-dimensional int array.
writeMDArray(HDF5DataSet, MDIntArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block or a slice of a multi-dimensional int array.
writeMDArray(String, MDIntArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a multi-dimensional int array.
writeMDArray(String, MDLongArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a multi-dimensional long array.
writeMDArray(String, MDLongArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a multi-dimensional long array.
writeMDArray(HDF5DataSet, MDLongArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block or a slice of a multi-dimensional long array.
writeMDArray(String, MDLongArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a multi-dimensional long array.
writeMDArray(String, MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes an array (of rank N) of object references.
writeMDArray(String, MDArray<String>, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes an array (of rank N) of object references.
writeMDArray(String, MDShortArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a multi-dimensional short array.
writeMDArray(String, MDShortArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a multi-dimensional short array.
writeMDArray(HDF5DataSet, MDShortArray, HDF5ArrayBlockParams) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block or a slice of a multi-dimensional short array.
writeMDArray(String, MDShortArray, HDF5DataSetTemplate) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a multi-dimensional short array.
writeMDArray(String, MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writeMDArray(String, MDArray<String>, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writeMDArray(String, MDArray<String>, int) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writeMDArray(String, MDArray<String>, int, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writeMDArray(String, HDF5TimeDurationMDArray, HDF5IntStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a multi-dimensional array of time durations.
writeMDArray(String, HDF5TimeDurationMDArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a multi-dimensional array of time durations.
writeMDArrayBlock(String, MDLongArray, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlock(String, MDArray<Date>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlock(String, MDArray<String>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeMDArrayBlock(String, MDArray<String>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArrayBlock(String, HDF5TimeDurationMDArray, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeMDArrayBlock(String, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlock(HDF5DataSet, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlock(String, HDF5CompoundType<T>, MDArray<T>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values.
writeMDArrayBlock(String, HDF5CompoundType<T>, MDArray<T>, long[], IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values.
writeMDArrayBlock(String, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of time stamps.
writeMDArrayBlock(String, MDArray<Date>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of dates.
writeMDArrayBlock(String, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlock(HDF5DataSet, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlock(String, HDF5EnumerationValueMDArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out a block of an array (of rank N) of Enum values give a given offset.
writeMDArrayBlock(String, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlock(HDF5DataSet, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlock(String, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlock(HDF5DataSet, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlock(String, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlock(HDF5DataSet, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlock(String, MDArray<String>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes out a block of a multi-dimensional array of object references.
writeMDArrayBlock(String, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlock(HDF5DataSet, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlock(String, MDArray<String>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a block of a String array (of rank N).
writeMDArrayBlock(String, HDF5TimeDurationMDArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a block of a multi-dimensional array of time durations.
writeMDArrayBlockWithOffset(String, MDLongArray, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlockWithOffset(String, MDArray<Date>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlockWithOffset(String, MDArray<Date>, int[], long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5DateTimeWriter
 
writeMDArrayBlockWithOffset(String, MDArray<String>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5ReferenceWriter
 
writeMDArrayBlockWithOffset(String, MDArray<String>, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArrayBlockWithOffset(String, HDF5TimeDurationMDArray, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeMDArrayBlockWithOffset(String, HDF5TimeDurationMDArray, int[], long[], int[]) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeMDArrayBlockWithOffset(String, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlockWithOffset(String, MDByteArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDByteArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a block of a multi-dimensional byte array.
writeMDArrayBlockWithOffset(String, HDF5CompoundType<T>, MDArray<T>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values give a given offset.
writeMDArrayBlockWithOffset(String, HDF5CompoundType<T>, MDArray<T>, long[], IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values give a given offset.
writeMDArrayBlockWithOffset(String, HDF5CompoundType<T>, MDArray<T>, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values give a given offset.
writeMDArrayBlockWithOffset(String, HDF5CompoundType<T>, MDArray<T>, int[], long[], int[], IHDF5CompoundInformationRetriever.IByteArrayInspector) - Method in interface ch.systemsx.cisd.hdf5.IHDF5CompoundWriter
Writes out a block of an array (of rank N) of compound values give a given offset.
writeMDArrayBlockWithOffset(String, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of time stamps.
writeMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of time stamps.
writeMDArrayBlockWithOffset(String, MDArray<Date>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of daates.
writeMDArrayBlockWithOffset(String, MDArray<Date>, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DateTimeWriter
Writes out a block of a multi-dimensional array of dates.
writeMDArrayBlockWithOffset(String, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlockWithOffset(String, MDDoubleArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDDoubleArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a block of a multi-dimensional double array.
writeMDArrayBlockWithOffset(String, HDF5EnumerationValueMDArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5EnumWriter
Writes out a block of an array (of rank N) of Enum values give a given offset.
writeMDArrayBlockWithOffset(String, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlockWithOffset(String, MDFloatArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDFloatArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a block of a multi-dimensional float array.
writeMDArrayBlockWithOffset(String, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlockWithOffset(String, MDIntArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDIntArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a block of a multi-dimensional int array.
writeMDArrayBlockWithOffset(String, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a block of a multi-dimensional long array.
writeMDArrayBlockWithOffset(String, MDArray<String>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes out a block of a multi-dimensional array of object references.
writeMDArrayBlockWithOffset(String, MDLongArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ReferenceWriter
Writes out a block of a multi-dimensional array of object references.
writeMDArrayBlockWithOffset(String, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlockWithOffset(String, MDShortArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlockWithOffset(HDF5DataSet, MDShortArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a block of a multi-dimensional short array.
writeMDArrayBlockWithOffset(String, MDArray<String>, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a block of a String array (of rank N).
writeMDArrayBlockWithOffset(String, HDF5TimeDurationMDArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a block of a multi-dimensional array of time durations.
writeMDArrayBlockWithOffset(String, HDF5TimeDurationMDArray, int[], long[], int[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5TimeDurationWriter
Writes out a block of a multi-dimensional array of time durations.
writeMDArraySlice(String, MDByteArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a slice of a multi-dimensional byte array.
writeMDArraySlice(HDF5DataSet, MDByteArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a slice of a multi-dimensional byte array.
writeMDArraySlice(String, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a slice of a multi-dimensional byte array.
writeMDArraySlice(HDF5DataSet, MDByteArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a slice of a multi-dimensional byte array.
writeMDArraySlice(String, MDDoubleArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a slice of a multi-dimensional double array.
writeMDArraySlice(HDF5DataSet, MDDoubleArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a slice of a multi-dimensional double array.
writeMDArraySlice(String, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a slice of a multi-dimensional double array.
writeMDArraySlice(HDF5DataSet, MDDoubleArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a slice of a multi-dimensional double array.
writeMDArraySlice(String, MDFloatArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a slice of a multi-dimensional float array.
writeMDArraySlice(HDF5DataSet, MDFloatArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a slice of a multi-dimensional float array.
writeMDArraySlice(String, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a slice of a multi-dimensional float array.
writeMDArraySlice(HDF5DataSet, MDFloatArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a slice of a multi-dimensional float array.
writeMDArraySlice(String, MDIntArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a slice of a multi-dimensional int array.
writeMDArraySlice(HDF5DataSet, MDIntArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a slice of a multi-dimensional int array.
writeMDArraySlice(String, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a slice of a multi-dimensional int array.
writeMDArraySlice(HDF5DataSet, MDIntArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a slice of a multi-dimensional int array.
writeMDArraySlice(String, MDLongArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a slice of a multi-dimensional long array.
writeMDArraySlice(HDF5DataSet, MDLongArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a slice of a multi-dimensional long array.
writeMDArraySlice(String, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a slice of a multi-dimensional long array.
writeMDArraySlice(HDF5DataSet, MDLongArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a slice of a multi-dimensional long array.
writeMDArraySlice(String, MDShortArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a slice of a multi-dimensional short array.
writeMDArraySlice(HDF5DataSet, MDShortArray, IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a slice of a multi-dimensional short array.
writeMDArraySlice(String, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a slice of a multi-dimensional short array.
writeMDArraySlice(HDF5DataSet, MDShortArray, long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a slice of a multi-dimensional short array.
writeMDArrayVL(String, MDArray<String>, HDF5GenericStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArrayVL(String, MDArray<String>) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeMDArrayVL(String, MDArray<String>) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writeMDArrayVL(String, MDArray<String>, HDF5GenericStorageFeatures) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String array (of rank N).
writer() - Method in interface ch.systemsx.cisd.hdf5.IHDF5WriterConfigurator
Returns an IHDF5Writer based on this configuration.
writeShort(int) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeSlicedMDArrayBlock(String, MDByteArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlock(HDF5DataSet, MDByteArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlock(String, MDByteArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlock(HDF5DataSet, MDByteArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlock(String, MDDoubleArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlock(HDF5DataSet, MDDoubleArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlock(String, MDDoubleArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlock(HDF5DataSet, MDDoubleArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlock(String, MDFloatArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlock(HDF5DataSet, MDFloatArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlock(String, MDFloatArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlock(HDF5DataSet, MDFloatArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlock(String, MDIntArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlock(HDF5DataSet, MDIntArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlock(String, MDIntArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlock(HDF5DataSet, MDIntArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlock(String, MDLongArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlock(HDF5DataSet, MDLongArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlock(String, MDLongArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlock(HDF5DataSet, MDLongArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlock(String, MDShortArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlock(HDF5DataSet, MDShortArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlock(String, MDShortArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlock(HDF5DataSet, MDShortArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlockWithOffset(String, MDByteArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDByteArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlockWithOffset(String, MDByteArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDByteArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ByteWriter
Writes out a sliced block of a multi-dimensional byte array.
writeSlicedMDArrayBlockWithOffset(String, MDDoubleArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDDoubleArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlockWithOffset(String, MDDoubleArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDDoubleArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5DoubleWriter
Writes out a sliced block of a multi-dimensional double array.
writeSlicedMDArrayBlockWithOffset(String, MDFloatArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDFloatArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlockWithOffset(String, MDFloatArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDFloatArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5FloatWriter
Writes out a sliced block of a multi-dimensional float array.
writeSlicedMDArrayBlockWithOffset(String, MDIntArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDIntArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlockWithOffset(String, MDIntArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDIntArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5IntWriter
Writes out a sliced block of a multi-dimensional int array.
writeSlicedMDArrayBlockWithOffset(String, MDLongArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDLongArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlockWithOffset(String, MDLongArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDLongArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5LongWriter
Writes out a sliced block of a multi-dimensional long array.
writeSlicedMDArrayBlockWithOffset(String, MDShortArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDShortArray, long[], IndexMap) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlockWithOffset(String, MDShortArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeSlicedMDArrayBlockWithOffset(HDF5DataSet, MDShortArray, long[], long[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5ShortWriter
Writes out a sliced block of a multi-dimensional short array.
writeString(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a String with a fixed maximal length.
writeStringArray(String, String[]) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a String array (of rank 1).
writeTimeDuration(String, long) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDuration(String, HDF5TimeDuration) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a time duration value.
writeTimeDurationArray(String, long[]) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArray(String, long[], HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArray(String, long[], HDF5TimeUnit, HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArray(String, HDF5TimeDuration[]) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArray(String, HDF5TimeDuration[], HDF5IntStorageFeatures) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArray(String, HDF5TimeDurationArray) - Method in interface ch.systemsx.cisd.hdf5.IHDF5SimpleWriter
Writes out a time duration array (of rank 1).
writeTimeDurationArrayBlock(String, long[], long, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArrayBlock(String, HDF5TimeDuration[], long) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArrayBlockWithOffset(String, long[], int, long, HDF5TimeUnit) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeTimeDurationArrayBlockWithOffset(String, HDF5TimeDuration[], int, long) - Method in class ch.systemsx.cisd.hdf5.HDF5TimeDurationWriter
 
writeUTF(String) - Method in class ch.systemsx.cisd.hdf5.io.HDF5DataSetRandomAccessFile
 
writeVL(String, String) - Method in class ch.systemsx.cisd.hdf5.HDF5StringWriter
 
writeVL(String, String) - Method in interface ch.systemsx.cisd.hdf5.IHDF5StringWriter
Writes out a String with variable maximal length.
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