ch.systemsx.cisd.hdf5

Class HDF5DateTimeWriter

java.lang.Object

ch.systemsx.cisd.hdf5.HDF5DateTimeWriter

All Implemented Interfaces:

IHDF5DateTimeReader, IHDF5DateTimeWriter

public class HDF5DateTimeWriter
extends java.lang.Object
implements IHDF5DateTimeWriter

Implementation of IHDF5DateTimeWriter.

Method Summary

Modifier and Type	Method and Description
void	createArray(java.lang.String objectPath, int size) Creates a time stamp array (of rank 1).
void	createArray(java.lang.String objectPath, int size, HDF5GenericStorageFeatures features) Creates a time stamp array (of rank 1).
void	createArray(java.lang.String objectPath, long size, int blockSize) Creates a time stamp array (of rank 1).
void	createArray(java.lang.String objectPath, long length, int blockSize, HDF5GenericStorageFeatures features) Creates a time stamp array (of rank 1).
void	createMDArray(java.lang.String objectPath, int[] dimensions) Creates a multi-dimensional array of time stamps / dates.
void	createMDArray(java.lang.String objectPath, int[] dimensions, HDF5IntStorageFeatures features) Creates a multi-dimensional array of time stamps / dates.
void	createMDArray(java.lang.String objectPath, long[] dimensions, int[] blockDimensions) Creates a multi-dimensional array of time stamps / dates.
void	createMDArray(java.lang.String objectPath, long[] dimensions, int[] blockDimensions, HDF5IntStorageFeatures features) Creates a multi-dimensional array of time stamps / dates.
java.util.Date[]	getArrayAttr(java.lang.String objectPath, java.lang.String attributeName) Reads a time stamp array attribute named attributeName from the data set objectPath and returns it as a Date[].
long[]	getArrayAttrAsLong(java.lang.String objectPath, java.lang.String attributeName) Reads a time stamp array attribute named attributeName from the data set objectPath.
java.util.Date	getAttr(java.lang.String objectPath, java.lang.String attributeName) Reads a time stamp attribute named attributeName from the data set objectPath and returns it as a Date.
long	getAttrAsLong(java.lang.String objectPath, java.lang.String attributeName) Reads a time stamp attribute named attributeName from the data set objectPath.
java.lang.Iterable<HDF5DataBlock<java.util.Date[]>>	getDateArrayNaturalBlocks(java.lang.String dataSetPath) Provides all natural blocks of this one-dimensional data set of Dates to iterate over.
java.lang.Iterable<HDF5MDDataBlock<ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>>>	getDateMDArrayNaturalBlocks(java.lang.String dataSetPath) Provides all natural blocks of this multi-dimensional data set to iterate over.
ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>	getMDArrayAttr(java.lang.String objectPath, java.lang.String attributeName) Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDLongArray	getMDArrayAttrAsLong(java.lang.String objectPath, java.lang.String attributeName) Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.
java.lang.Iterable<HDF5DataBlock<long[]>>	getTimeStampArrayNaturalBlocks(java.lang.String dataSetPath) Provides all natural blocks of this one-dimensional data set of time stamps to iterate over.
java.lang.Iterable<HDF5MDDataBlock<ch.systemsx.cisd.base.mdarray.MDLongArray>>	getTimeStampMDArrayNaturalBlocks(java.lang.String dataSetPath) Provides all natural blocks of this multi-dimensional data set to iterate over.
boolean	isTimeStamp(java.lang.String objectPath) Returns true, if the data set given by objectPath is a time stamp and false otherwise.
boolean	isTimeStamp(java.lang.String objectPath, java.lang.String attributeName) Returns true, if the attribute attributeName of data set objectPath is a time stamp and false otherwise.
java.util.Date	readDate(java.lang.String objectPath) Reads a time stamp value from the data set objectPath and returns it as a Date.
java.util.Date[]	readDateArray(java.lang.String objectPath) Reads a time stamp array (of rank 1) from the data set objectPath and returns it as an array of Dates.
java.util.Date[]	readDateArrayBlock(java.lang.String objectPath, int blockSize, long blockNumber) Reads a block of a Date array (of rank 1) from the data set objectPath.
java.util.Date[]	readDateArrayBlockWithOffset(java.lang.String objectPath, int blockSize, long offset) Reads a block of a Date array (of rank 1) from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>	readDateMDArray(java.lang.String objectPath) Reads a multi-dimensional array of Dates from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>	readDateMDArrayBlock(java.lang.String objectPath, int[] blockDimensions, long[] blockNumber) Reads a multi-dimensional array of Dates from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>	readDateMDArrayBlockWithOffset(java.lang.String objectPath, int[] blockDimensions, long[] offset) Reads a multi-dimensional array of Dates from the data set objectPath.
long	readTimeStamp(java.lang.String objectPath) Reads a time stamp value from the data set objectPath.
long[]	readTimeStampArray(java.lang.String objectPath) Reads a time stamp array from the data set objectPath.
long[]	readTimeStampArrayBlock(java.lang.String objectPath, int blockSize, long blockNumber) Reads a block of a time stamp array (of rank 1) from the data set objectPath.
long[]	readTimeStampArrayBlockWithOffset(java.lang.String objectPath, int blockSize, long offset) Reads a block of a time stamp array (of rank 1) from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDLongArray	readTimeStampMDArray(java.lang.String objectPath) Reads a multi-dimensional array of time stamps from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDLongArray	readTimeStampMDArrayBlock(java.lang.String objectPath, int[] blockDimensions, long[] blockNumber) Reads a multi-dimensional array of time stamps from the data set objectPath.
ch.systemsx.cisd.base.mdarray.MDLongArray	readTimeStampMDArrayBlockWithOffset(java.lang.String objectPath, int[] blockDimensions, long[] offset) Reads a multi-dimensional array of time stamps from the data set objectPath.
int[]	readToMDArrayBlockWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray array, int[] blockDimensions, long[] offset, int[] memoryOffset) Reads a block of the multi-dimensional array data set objectPath of type time stamp into a given array in memory.
int[]	readToMDArrayWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray array, int[] memoryOffset) Reads a multi-dimensional array data set objectPath of type time stamp into a given array in memory.
void	setArrayAttr(java.lang.String objectPath, java.lang.String name, java.util.Date[] dates) Set a date array value as attribute on the referenced object.
void	setArrayAttr(java.lang.String objectPath, java.lang.String name, long[] timeStamps) Set a time stamp array value as attribute on the referenced object.
void	setAttr(java.lang.String objectPath, java.lang.String name, java.util.Date date) Set a date value as attribute on the referenced object.
void	setAttr(java.lang.String objectPath, java.lang.String name, long timeStamp) Set a time stamp value as attribute on the referenced object.
void	setMDArrayAttr(java.lang.String objectPath, java.lang.String name, ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> value) Sets a multi-dimensional timestamp array attribute on the referenced object.
void	setMDArrayAttr(java.lang.String objectPath, java.lang.String name, ch.systemsx.cisd.base.mdarray.MDLongArray timeStamps) Sets a multi-dimensional timestamp array attribute on the referenced object.
void	write(java.lang.String objectPath, java.util.Date date) Writes out a time stamp value provided as a Date.
void	write(java.lang.String objectPath, long timeStamp) Writes out a time stamp value.
void	writeArray(java.lang.String objectPath, java.util.Date[] dates) Writes out a Date array (of rank 1).
void	writeArray(java.lang.String objectPath, java.util.Date[] dates, HDF5GenericStorageFeatures features) Writes out a Date array (of rank 1).
void	writeArray(java.lang.String objectPath, long[] timeStamps) Writes out a time stamp array (of rank 1).
void	writeArray(java.lang.String objectPath, long[] timeStamps, HDF5GenericStorageFeatures features) Writes out a time stamp array (of rank 1).
void	writeArrayBlock(java.lang.String objectPath, long[] data, long blockNumber) Writes out a block of a time stamp array (which is stored as a long array of rank 1).
void	writeArrayBlockWithOffset(java.lang.String objectPath, long[] data, int dataSize, long offset) Writes out a block of a time stamp array (which is stored as a long array of rank 1).
void	writeMDArray(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data, HDF5IntStorageFeatures features) Writes out a multi-dimensional array of dates.
void	writeMDArray(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray data, HDF5IntStorageFeatures features) Writes out a multi-dimensional array of time stamps.
void	writeMDArrayBlock(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data, long[] blockNumber) Writes out a block of a multi-dimensional array of dates.
void	writeMDArrayBlock(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray data, long[] blockNumber) Writes out a block of a multi-dimensional array of time stamps.
void	writeMDArrayBlockWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data, int[] blockDimensions, long[] offset, int[] memoryOffset) Writes out a block of a multi-dimensional array of dates.
void	writeMDArrayBlockWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data, long[] offset) Writes out a block of a multi-dimensional array of daates.
void	writeMDArrayBlockWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray data, int[] blockDimensions, long[] offset, int[] memoryOffset) Writes out a block of a multi-dimensional array of time stamps.
void	writeMDArrayBlockWithOffset(java.lang.String objectPath, ch.systemsx.cisd.base.mdarray.MDLongArray data, long[] offset) Writes out a block of a multi-dimensional array of time stamps.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ch.systemsx.cisd.hdf5.IHDF5DateTimeReader

getArrayAttr, getArrayAttrAsLong, getAttr, getAttrAsLong, getDateArrayNaturalBlocks, getDateMDArrayNaturalBlocks, getMDArrayAttr, getMDArrayAttrAsLong, getTimeStampArrayNaturalBlocks, getTimeStampMDArrayNaturalBlocks, isTimeStamp, isTimeStamp, readDate, readDateArray, readDateArrayBlock, readDateArrayBlockWithOffset, readDateMDArray, readDateMDArrayBlock, readDateMDArrayBlockWithOffset, readTimeStamp, readTimeStampArray, readTimeStampArrayBlock, readTimeStampArrayBlockWithOffset, readTimeStampMDArray, readTimeStampMDArrayBlock, readTimeStampMDArrayBlockWithOffset, readToMDArrayBlockWithOffset, readToMDArrayWithOffset

Method Detail

setAttr

public void setAttr(java.lang.String objectPath,
                    java.lang.String name,
                    long timeStamp)

Description copied from interface: IHDF5DateTimeWriter

Set a time stamp value as attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

timeStamp - The value of the attribute.

setAttr

public void setAttr(java.lang.String objectPath,
                    java.lang.String name,
                    java.util.Date date)

Description copied from interface: IHDF5DateTimeWriter

Set a date value as attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

date - The value of the attribute.

setArrayAttr

public void setArrayAttr(java.lang.String objectPath,
                         java.lang.String name,
                         java.util.Date[] dates)

Description copied from interface: IHDF5DateTimeWriter

Set a date array value as attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setArrayAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

dates - The value of the attribute.

setArrayAttr

public void setArrayAttr(java.lang.String objectPath,
                         java.lang.String name,
                         long[] timeStamps)

Description copied from interface: IHDF5DateTimeWriter

Set a time stamp array value as attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setArrayAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

timeStamps - The value of the attribute.

setMDArrayAttr

public void setMDArrayAttr(java.lang.String objectPath,
                           java.lang.String name,
                           ch.systemsx.cisd.base.mdarray.MDLongArray timeStamps)

Description copied from interface: IHDF5DateTimeWriter

Sets a multi-dimensional timestamp array attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setMDArrayAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

timeStamps - The value of the attribute.

setMDArrayAttr

public void setMDArrayAttr(java.lang.String objectPath,
                           java.lang.String name,
                           ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> value)

Description copied from interface: IHDF5DateTimeWriter

Sets a multi-dimensional timestamp array attribute on the referenced object.

The referenced object must exist, that is it need to have been written before by one of the write() methods.

Specified by:

setMDArrayAttr in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name of the object to add the attribute to.

name - The name of the attribute.

value - The value of the attribute.

write

public void write(java.lang.String objectPath,
                  long timeStamp)

Description copied from interface: IHDF5DateTimeWriter

Writes out a time stamp value. The data set will be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

Note: Time stamps are stored as long values.

Specified by:

write in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

timeStamp - The timestamp to write as number of milliseconds since January 1, 1970, 00:00:00 GMT.

createArray

public void createArray(java.lang.String objectPath,
                        int size)

Description copied from interface: IHDF5DateTimeWriter

Creates a time stamp array (of rank 1).

Note: Time stamps are stored as long values.

Specified by:

createArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

size - The size of the byte array to create. This will be the total size for non-extendable data sets and the size of one chunk for extendable (chunked) data sets. For extendable data sets the initial size of the array will be 0, see IHDF5WriterConfigurator.dontUseExtendableDataTypes().

createArray

public void createArray(java.lang.String objectPath,
                        long size,
                        int blockSize)

Description copied from interface: IHDF5DateTimeWriter

Creates a time stamp array (of rank 1).

Note: Time stamps are stored as long values.

Specified by:

createArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

size - The length of the data set to create.

blockSize - The size of one block (for block-wise IO). Ignored if no extendable data sets are used (see IHDF5WriterConfigurator.dontUseExtendableDataTypes()) and deflate == false.

createArray

public void createArray(java.lang.String objectPath,
                        int size,
                        HDF5GenericStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Creates a time stamp array (of rank 1).

Note: Time stamps are stored as long values.

Specified by:

createArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

size - The size of the array to create. This will be the total size for non-extendable data sets and the size of one chunk for extendable (chunked) data sets. For extendable data sets the initial size of the array will be 0, see HDF5GenericStorageFeatures.

features - The storage features of the data set.

createArray

public void createArray(java.lang.String objectPath,
                        long length,
                        int blockSize,
                        HDF5GenericStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Creates a time stamp array (of rank 1).

Note: Time stamps are stored as long values.

Specified by:

createArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

length - The length of the data set to create.

blockSize - The size of one block (for block-wise IO). Ignored if no extendable data sets are used (see IHDF5WriterConfigurator.dontUseExtendableDataTypes()) and deflate == false.

features - The storage features of the data set.

writeArray

public void writeArray(java.lang.String objectPath,
                       long[] timeStamps)

Description copied from interface: IHDF5DateTimeWriter

Writes out a time stamp array (of rank 1). The data set will be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

Note: Time stamps are stored as long values.

Specified by:

writeArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

timeStamps - The timestamps to write as number of milliseconds since January 1, 1970, 00:00:00 GMT.

writeArray

public void writeArray(java.lang.String objectPath,
                       long[] timeStamps,
                       HDF5GenericStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Writes out a time stamp array (of rank 1). The data set will be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

Note: Time stamps are stored as long values.

Specified by:

writeArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

timeStamps - The timestamps to write as number of milliseconds since January 1, 1970, 00:00:00 GMT.

features - The storage features of the data set.

writeArrayBlock

public void writeArrayBlock(java.lang.String objectPath,
                            long[] data,
                            long blockNumber)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a time stamp array (which is stored as a long array of rank 1). The data set needs to have been created by IHDF5DateTimeWriter.createArray(String, long, int, HDF5GenericStorageFeatures) beforehand.

Note: For best performance, the block size in this method should be chosen to be equal to the blockSize argument of the IHDF5LongWriter.createArray(String, long, int, HDF5IntStorageFeatures) call that was used to create the data set.

Specified by:

writeArrayBlock in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. The length defines the block size. Must not be null or of length 0.

blockNumber - The number of the block to write.

writeArrayBlockWithOffset

public void writeArrayBlockWithOffset(java.lang.String objectPath,
                                      long[] data,
                                      int dataSize,
                                      long offset)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a time stamp array (which is stored as a long array of rank 1). The data set needs to have been created by IHDF5DateTimeWriter.createArray(String, long, int, HDF5GenericStorageFeatures) beforehand.

Use this method instead of IHDF5DateTimeWriter.writeArrayBlock(String, long[], long) if the total size of the data set is not a multiple of the block size.

Note: For best performance, the typical dataSize in this method should be chosen to be equal to the blockSize argument of the IHDF5LongWriter.createArray(String, long, int, HDF5IntStorageFeatures) call that was used to create the data set.

Specified by:

writeArrayBlockWithOffset in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. The length defines the block size. Must not be null or of length 0.

dataSize - The (real) size of data (needs to be <= data.length )

offset - The offset in the data set to start writing to.

write

public void write(java.lang.String objectPath,
                  java.util.Date date)

Description copied from interface: IHDF5DateTimeWriter

Writes out a time stamp value provided as a Date.

Note: The time stamp is stored as long array and tagged as the according type variant.

Specified by:

write in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

date - The date to write.

See Also:

IHDF5DateTimeWriter.write(String, long)

writeArray

public void writeArray(java.lang.String objectPath,
                       java.util.Date[] dates)

Description copied from interface: IHDF5DateTimeWriter

Writes out a Date array (of rank 1).

Note: Time stamps are stored as long[] arrays and tagged as the according type variant.

Specified by:

writeArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dates - The dates to write.

See Also:

IHDF5DateTimeWriter.writeArray(String, long[])

writeArray

public void writeArray(java.lang.String objectPath,
                       java.util.Date[] dates,
                       HDF5GenericStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Writes out a Date array (of rank 1).

Note: Time date is stored as long[] arrays and tagged as the according type variant.

Specified by:

writeArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dates - The dates to write.

features - The storage features of the data set.

See Also:

IHDF5DateTimeWriter.writeArray(String, long[], HDF5GenericStorageFeatures)

writeMDArray

public void writeMDArray(java.lang.String objectPath,
                         ch.systemsx.cisd.base.mdarray.MDLongArray data,
                         HDF5IntStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Writes out a multi-dimensional array of time stamps.

Specified by:

writeMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

features - The storage features of the data set.

createMDArray

public void createMDArray(java.lang.String objectPath,
                          int[] dimensions)

Description copied from interface: IHDF5DateTimeWriter

Creates a multi-dimensional array of time stamps / dates.

Specified by:

createMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dimensions - When the writer is configured to use extendable data types (see IHDF5WriterConfigurator.dontUseExtendableDataTypes()), the initial dimensions and the dimensions of a chunk of the array will be dimensions. When the writer is configured to enforce a on-extendable data set, the initial dimensions equal the dimensions and will be dimensions.

createMDArray

public void createMDArray(java.lang.String objectPath,
                          long[] dimensions,
                          int[] blockDimensions)

Description copied from interface: IHDF5DateTimeWriter

Creates a multi-dimensional array of time stamps / dates.

Specified by:

createMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dimensions - The dimensions of the array.

blockDimensions - The dimensions of one block (chunk) of the array.

createMDArray

public void createMDArray(java.lang.String objectPath,
                          int[] dimensions,
                          HDF5IntStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Creates a multi-dimensional array of time stamps / dates.

Specified by:

createMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dimensions - The dimensions of the long array to create. When requesting a chunked data set (e.g. HDF5IntStorageFeatures.INT_CHUNKED), the initial size of the array will be 0 and the chunk size will be dimensions. When allowing a chunked data set (e.g. HDF5IntStorageFeatures.INT_NO_COMPRESSION when the writer is not configured to avoid extendable data types, see IHDF5WriterConfigurator.dontUseExtendableDataTypes()), the initial size and the chunk size of the array will be dimensions. When enforcing a on-extendable data set (e.g. HDF5IntStorageFeatures.INT_CONTIGUOUS), the initial size equals the total size and will be dimensions.

features - The storage features of the data set.

createMDArray

public void createMDArray(java.lang.String objectPath,
                          long[] dimensions,
                          int[] blockDimensions,
                          HDF5IntStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Creates a multi-dimensional array of time stamps / dates.

Specified by:

createMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

dimensions - The dimensions of the array.

blockDimensions - The dimensions of one block (chunk) of the array.

features - The storage features of the data set.

writeMDArrayBlock

public void writeMDArrayBlock(java.lang.String objectPath,
                              ch.systemsx.cisd.base.mdarray.MDLongArray data,
                              long[] blockNumber)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of time stamps.

Specified by:

writeMDArrayBlock in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

blockNumber - The block number in each dimension (offset: multiply with the extend in the according dimension).

writeMDArrayBlockWithOffset

public void writeMDArrayBlockWithOffset(java.lang.String objectPath,
                                        ch.systemsx.cisd.base.mdarray.MDLongArray data,
                                        long[] offset)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of time stamps.

Specified by:

writeMDArrayBlockWithOffset in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

offset - The offset in the data set to start writing to in each dimension.

writeMDArrayBlockWithOffset

public void writeMDArrayBlockWithOffset(java.lang.String objectPath,
                                        ch.systemsx.cisd.base.mdarray.MDLongArray data,
                                        int[] blockDimensions,
                                        long[] offset,
                                        int[] memoryOffset)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of time stamps.

Specified by:

writeMDArrayBlockWithOffset in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null.

blockDimensions - The dimensions of the block to write to the data set.

offset - The offset of the block in the data set to start writing to in each dimension.

memoryOffset - The offset of the block in the data array.

writeMDArray

public void writeMDArray(java.lang.String objectPath,
                         ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data,
                         HDF5IntStorageFeatures features)

Description copied from interface: IHDF5DateTimeWriter

Writes out a multi-dimensional array of dates.

Specified by:

writeMDArray in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

features - The storage features of the data set.

writeMDArrayBlock

public void writeMDArrayBlock(java.lang.String objectPath,
                              ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data,
                              long[] blockNumber)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of dates.

Specified by:

writeMDArrayBlock in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

blockNumber - The block number in each dimension (offset: multiply with the extend in the according dimension).

writeMDArrayBlockWithOffset

public void writeMDArrayBlockWithOffset(java.lang.String objectPath,
                                        ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data,
                                        long[] offset)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of daates.

Specified by:

writeMDArrayBlockWithOffset in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null. All columns need to have the same length.

offset - The offset in the data set to start writing to in each dimension.

writeMDArrayBlockWithOffset

public void writeMDArrayBlockWithOffset(java.lang.String objectPath,
                                        ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> data,
                                        int[] blockDimensions,
                                        long[] offset,
                                        int[] memoryOffset)

Description copied from interface: IHDF5DateTimeWriter

Writes out a block of a multi-dimensional array of dates.

Specified by:

writeMDArrayBlockWithOffset in interface IHDF5DateTimeWriter

Parameters:

objectPath - The name (including path information) of the data set object in the file.

data - The data to write. Must not be null.

blockDimensions - The dimensions of the block to write to the data set.

offset - The offset of the block in the data set to start writing to in each dimension.

memoryOffset - The offset of the block in the data array.

getAttrAsLong

public long getAttrAsLong(java.lang.String objectPath,
                          java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp attribute named attributeName from the data set objectPath.

Specified by:

getAttrAsLong in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp as number of milliseconds since January 1, 1970, 00:00:00 GMT.

getAttr

public java.util.Date getAttr(java.lang.String objectPath,
                              java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp attribute named attributeName from the data set objectPath and returns it as a Date.

Specified by:

getAttr in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp as Date.

getArrayAttrAsLong

public long[] getArrayAttrAsLong(java.lang.String objectPath,
                                 java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp array attribute named attributeName from the data set objectPath.

Specified by:

getArrayAttrAsLong in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp array; each element is a number of milliseconds since January 1, 1970, 00:00:00 GMT.

getMDArrayAttrAsLong

public ch.systemsx.cisd.base.mdarray.MDLongArray getMDArrayAttrAsLong(java.lang.String objectPath,
                                                                      java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.

Specified by:

getMDArrayAttrAsLong in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp array; each element is a number of milliseconds since January 1, 1970, 00:00:00 GMT.

getArrayAttr

public java.util.Date[] getArrayAttr(java.lang.String objectPath,
                                     java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp array attribute named attributeName from the data set objectPath and returns it as a Date[].

Specified by:

getArrayAttr in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp as Date.

getMDArrayAttr

public ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> getMDArrayAttr(java.lang.String objectPath,
                                                                            java.lang.String attributeName)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimension time stamp array attribute named attributeName from the data set objectPath.

Specified by:

getMDArrayAttr in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

attributeName - The name of the attribute to read.

Returns:

The time stamp as Date.

isTimeStamp

public boolean isTimeStamp(java.lang.String objectPath,
                           java.lang.String attributeName)
                    throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Returns true, if the attribute attributeName of data set objectPath is a time stamp and false otherwise.

Specified by:

isTimeStamp in interface IHDF5DateTimeReader

Throws:

HDF5JavaException

isTimeStamp

public boolean isTimeStamp(java.lang.String objectPath)
                    throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Returns true, if the data set given by objectPath is a time stamp and false otherwise.

Specified by:

isTimeStamp in interface IHDF5DateTimeReader

Throws:

HDF5JavaException

readTimeStamp

public long readTimeStamp(java.lang.String objectPath)
                   throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp value from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readTimeStamp in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The time stamp as number of milliseconds since January 1, 1970, 00:00:00 GMT.

Throws:

HDF5JavaException - If the objectPath is not defined as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

readTimeStampArray

public long[] readTimeStampArray(java.lang.String objectPath)
                          throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp array from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readTimeStampArray in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The time stamp as number of milliseconds since January 1, 1970, 00:00:00 GMT.

Throws:

HDF5JavaException - If the objectPath is not defined as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

readTimeStampArrayBlock

public long[] readTimeStampArrayBlock(java.lang.String objectPath,
                                      int blockSize,
                                      long blockNumber)

Description copied from interface: IHDF5DateTimeReader

Reads a block of a time stamp array (of rank 1) from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readTimeStampArrayBlock in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockSize - The block size (this will be the length of the long[] returned if the data set is long enough).

blockNumber - The number of the block to read (starting with 0, offset: multiply with blockSize).

Returns:

The data read from the data set. The length will be min(size - blockSize*blockNumber, blockSize).

readTimeStampArrayBlockWithOffset

public long[] readTimeStampArrayBlockWithOffset(java.lang.String objectPath,
                                                int blockSize,
                                                long offset)

Description copied from interface: IHDF5DateTimeReader

Reads a block of a time stamp array (of rank 1) from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readTimeStampArrayBlockWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockSize - The block size (this will be the length of the long[] returned).

offset - The offset of the block in the data set to start reading from (starting with 0).

Returns:

The data block read from the data set.

readDate

public java.util.Date readDate(java.lang.String objectPath)
                        throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp value from the data set objectPath and returns it as a Date. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readDate in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The time stamp as Date.

Throws:

HDF5JavaException - If the objectPath does not denote a time stamp.

readDateArray

public java.util.Date[] readDateArray(java.lang.String objectPath)
                               throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Reads a time stamp array (of rank 1) from the data set objectPath and returns it as an array of Dates. The time stamp array is stored as a an array of long values in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readDateArray in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The time stamp as Date.

Throws:

HDF5JavaException - If the objectPath does not denote a time stamp.

readTimeStampMDArray

public ch.systemsx.cisd.base.mdarray.MDLongArray readTimeStampMDArray(java.lang.String objectPath)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of time stamps from the data set objectPath.

Specified by:

readTimeStampMDArray in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The data read from the data set.

readTimeStampMDArrayBlock

public ch.systemsx.cisd.base.mdarray.MDLongArray readTimeStampMDArrayBlock(java.lang.String objectPath,
                                                                           int[] blockDimensions,
                                                                           long[] blockNumber)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of time stamps from the data set objectPath.

Specified by:

readTimeStampMDArrayBlock in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockDimensions - The extent of the block in each dimension.

blockNumber - The block number in each dimension (offset: multiply with the blockDimensions in the according dimension).

Returns:

The data block read from the data set.

readTimeStampMDArrayBlockWithOffset

public ch.systemsx.cisd.base.mdarray.MDLongArray readTimeStampMDArrayBlockWithOffset(java.lang.String objectPath,
                                                                                     int[] blockDimensions,
                                                                                     long[] offset)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of time stamps from the data set objectPath.

Specified by:

readTimeStampMDArrayBlockWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockDimensions - The extent of the block in each dimension.

offset - The offset in the data set to start reading from in each dimension.

Returns:

The data block read from the data set.

readToMDArrayWithOffset

public int[] readToMDArrayWithOffset(java.lang.String objectPath,
                                     ch.systemsx.cisd.base.mdarray.MDLongArray array,
                                     int[] memoryOffset)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array data set objectPath of type time stamp into a given array in memory.

Specified by:

readToMDArrayWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

array - The array to read the data into.

memoryOffset - The offset in the array to write the data to.

Returns:

The effective dimensions of the block in array that was filled.

readToMDArrayBlockWithOffset

public int[] readToMDArrayBlockWithOffset(java.lang.String objectPath,
                                          ch.systemsx.cisd.base.mdarray.MDLongArray array,
                                          int[] blockDimensions,
                                          long[] offset,
                                          int[] memoryOffset)

Description copied from interface: IHDF5DateTimeReader

Reads a block of the multi-dimensional array data set objectPath of type time stamp into a given array in memory.

Specified by:

readToMDArrayBlockWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

array - The array to read the data into.

blockDimensions - The size of the block to read along each axis.

offset - The offset of the block in the data set.

memoryOffset - The offset of the block in the array to write the data to.

Returns:

The effective dimensions of the block in array that was filled.

getTimeStampArrayNaturalBlocks

public java.lang.Iterable<HDF5DataBlock<long[]>> getTimeStampArrayNaturalBlocks(java.lang.String dataSetPath)
                                                                         throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Provides all natural blocks of this one-dimensional data set of time stamps to iterate over.

Specified by:

getTimeStampArrayNaturalBlocks in interface IHDF5DateTimeReader

Throws:

HDF5JavaException - If the data set is not of rank 1.

See Also:

HDF5DataBlock

readDateArrayBlock

public java.util.Date[] readDateArrayBlock(java.lang.String objectPath,
                                           int blockSize,
                                           long blockNumber)

Description copied from interface: IHDF5DateTimeReader

Reads a block of a Date array (of rank 1) from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readDateArrayBlock in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockSize - The block size (this will be the length of the long[] returned if the data set is long enough).

blockNumber - The number of the block to read (starting with 0, offset: multiply with blockSize).

Returns:

The data read from the data set. The length will be min(size - blockSize*blockNumber, blockSize).

readDateArrayBlockWithOffset

public java.util.Date[] readDateArrayBlockWithOffset(java.lang.String objectPath,
                                                     int blockSize,
                                                     long offset)

Description copied from interface: IHDF5DateTimeReader

Reads a block of a Date array (of rank 1) from the data set objectPath. The time stamp is stored as a long value in the HDF5 file. It needs to be tagged as type variant HDF5DataTypeVariant.TIMESTAMP_MILLISECONDS_SINCE_START_OF_THE_EPOCH.

This tagging is done by the writer when using IHDF5SimpleWriter.writeTimeDuration(String, HDF5TimeDuration) or can be done by calling IHDF5ObjectReadWriteInfoProviderHandler.setTypeVariant(String, HDF5DataTypeVariant), most conveniently by code like

 writer.addTypeVariant("/dataSetPath", HDF5TimeUnit.SECONDS.getTypeVariant());
 

Specified by:

readDateArrayBlockWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockSize - The block size (this will be the length of the long[] returned).

offset - The offset of the block in the data set to start reading from (starting with 0).

Returns:

The data block read from the data set.

getDateArrayNaturalBlocks

public java.lang.Iterable<HDF5DataBlock<java.util.Date[]>> getDateArrayNaturalBlocks(java.lang.String dataSetPath)
                                                                              throws HDF5JavaException

Description copied from interface: IHDF5DateTimeReader

Provides all natural blocks of this one-dimensional data set of Dates to iterate over.

Specified by:

getDateArrayNaturalBlocks in interface IHDF5DateTimeReader

Throws:

HDF5JavaException - If the data set is not of rank 1.

See Also:

HDF5DataBlock

getTimeStampMDArrayNaturalBlocks

public java.lang.Iterable<HDF5MDDataBlock<ch.systemsx.cisd.base.mdarray.MDLongArray>> getTimeStampMDArrayNaturalBlocks(java.lang.String dataSetPath)

Description copied from interface: IHDF5DateTimeReader

Provides all natural blocks of this multi-dimensional data set to iterate over.

Specified by:

getTimeStampMDArrayNaturalBlocks in interface IHDF5DateTimeReader

See Also:

HDF5MDDataBlock

readDateMDArray

public ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> readDateMDArray(java.lang.String objectPath)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of Dates from the data set objectPath.

Specified by:

readDateMDArray in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

Returns:

The data read from the data set.

readDateMDArrayBlock

public ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> readDateMDArrayBlock(java.lang.String objectPath,
                                                                                  int[] blockDimensions,
                                                                                  long[] blockNumber)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of Dates from the data set objectPath.

Specified by:

readDateMDArrayBlock in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockDimensions - The extent of the block in each dimension.

blockNumber - The block number in each dimension (offset: multiply with the blockDimensions in the according dimension).

Returns:

The data block read from the data set.

readDateMDArrayBlockWithOffset

public ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date> readDateMDArrayBlockWithOffset(java.lang.String objectPath,
                                                                                            int[] blockDimensions,
                                                                                            long[] offset)

Description copied from interface: IHDF5DateTimeReader

Reads a multi-dimensional array of Dates from the data set objectPath.

Specified by:

readDateMDArrayBlockWithOffset in interface IHDF5DateTimeReader

Parameters:

objectPath - The name (including path information) of the data set object in the file.

blockDimensions - The extent of the block in each dimension.

offset - The offset in the data set to start reading from in each dimension.

Returns:

The data block read from the data set.

getDateMDArrayNaturalBlocks

public java.lang.Iterable<HDF5MDDataBlock<ch.systemsx.cisd.base.mdarray.MDArray<java.util.Date>>> getDateMDArrayNaturalBlocks(java.lang.String dataSetPath)

Description copied from interface: IHDF5DateTimeReader

Provides all natural blocks of this multi-dimensional data set to iterate over.

Specified by:

getDateMDArrayNaturalBlocks in interface IHDF5DateTimeReader

See Also:

HDF5MDDataBlock