Package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto

Class AlignmentMatch

  • All Implemented Interfaces:
    java.io.Serializable
    @JsonObject("AlignmentMatch")
public class AlignmentMatch
extends java.lang.Object
implements java.io.Serializable
    Alignment match between a sequence and a query.
    See Also:
    Serialized Form

    • Constructor Detail

      • AlignmentMatch

        public AlignmentMatch()

    • Method Detail

      • getSequenceStart

        public int getSequenceStart()

      • setSequenceStart

        public void setSequenceStart​(int sequenceStart)

      • getSequenceEnd

        public int getSequenceEnd()

      • setSequenceEnd

        public void setSequenceEnd​(int sequenceEnd)

      • getQueryStart

        public int getQueryStart()

      • setQueryStart

        public void setQueryStart​(int queryStart)

      • getQueryEnd

        public int getQueryEnd()

      • setQueryEnd

        public void setQueryEnd​(int queryEnd)

      • getNumberOfMismatches

        public int getNumberOfMismatches()

      • setNumberOfMismatches

        public void setNumberOfMismatches​(int numberOfMismatches)

      • getTotalNumberOfGaps

        public int getTotalNumberOfGaps()

      • setTotalNumberOfGaps

        public void setTotalNumberOfGaps​(int totalNumberOfGaps)

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object