All Classes Interface Summary Class Summary Enum Summary Exception Summary Annotation Types Summary
| Class |
Description |
| AbstractEntityProperty |
|
| AbstractEntitySearchResultLocation |
Abstract super class of SearchDomain results based of openBIS entities.
|
| AbstractExpression |
Stores information describing the common part of grid custom filter and column.
|
| AbstractExpressionWithParameters |
|
| AbstractExternalData |
A DTO for any kind of data set.
|
| AbstractExternalData.DataSetComponentsComparator |
Comparator for data sets contained in a (virtual) container which uses ascending order in container.
|
| AbstractProjectUpdates |
Description of the updates which should be performed on the project.
|
| AbstractRegistrationHolder |
Super class of DTOs which hold registration data.
|
| AbstractType |
|
| AggregationServiceDescription |
Bean with information about aggregation services that provide data.
|
| AggregationServiceType |
The different kinds of aggregation services.
|
| AlignmentMatch |
Alignment match between a sequence and a query.
|
| AndDataSetFilter |
Combining filters by logical AND.
|
| ArchiverDataSetCriteria |
Criteria for archiving data sets.
|
| ArchivingServiceKind |
|
| AssociatedEntityKind |
The GWT counterpart to ch.systemsx.cisd.openbis.generic.shared.api.v1.SearchableEntityKind.
|
| AsyncBatchRegistrationResult |
|
| Attachment |
Immutable value object representing an attachment.
|
| Attachment |
GWT version of AttachmentPE
|
| Attachment.AttachmentInitializer |
|
| AttachmentDownloadConstants |
Some constants needed to create attachment download URLs.
|
| AttachmentHolderKind |
|
| AttachmentVersions |
Encapsulation of all versions of an Attachment file.
|
| AttachmentWithContent |
|
| AttributeSearchFieldKindProvider |
|
| AuthorizationFailureException |
|
| AuthorizationGroup |
The GWT equivalent to AuthorizationGroupPE.
|
| AuthorizationGroupUpdates |
Specifies the changes that should be performed on given authorization group.
|
| BasicConstant |
Definition of basic constants.
|
| BasicDataSetUpdates |
|
| BasicEntityDescription |
Entity kind and identifier.
|
| BasicEntityInformationHolder |
|
| BasicEntityType |
An abstract entity type.
|
| BasicExperimentUpdates |
|
| BasicMetaprojectUpdates |
|
| BasicProjectIdentifier |
The GWT counterpart to ProjectIdentifier.
|
| BasicSampleUpdates |
|
| BasicURLEncoder |
java.net.URLEncoder version that can be run on the client side
|
| BatchOperationKind |
Enumeration for batch operation kinds.
|
| BatchRegistrationResult |
Batch registration is based on file input.
|
| BlastScore |
Wraps raw score, bit score and evalue of a BLAST search result.
|
| BuildAndEnvironmentInfo |
The build and environment information for openBIS.
|
| Code<T extends Code<T>> |
A code.
|
| CodeAndLabel |
Value object which has a label and a normalized code.
|
| CodeConverter |
Methods for converter codes from business layer to database and from database to business layer.
|
| CodeNormalizer |
|
| CodeWithRegistration<T extends CodeWithRegistration<T>> |
|
| CodeWithRegistrationAndModificationDate<T extends CodeWithRegistration<T>> |
|
| ColumnDisplaySettingsUpdate |
A command that updates column settings for a one specified grid.
|
| ColumnSetting |
Class storing personalised display settings for a table column.
|
| CommonGridIDs |
|
| CompareType |
|
| ConfigurationFailureException |
The ConfigurationFailureException is the super class of all exceptions that have their cause in an inappropriate configuration of the
system.
|
| ContainerDataSet |
A virtual data set "containing" other data sets.
|
| ControlledVocabularyPropertyType |
|
| ControlledVocabularyPropertyType.ControlledVocabularyPropertyTypeInitializer |
|
| ControlledVocabularyPropertyType.VocabularyTerm |
|
| CorePlugin |
Represents a versioned openBIS core plugin.
|
| CustomColumnLinkParam |
|
| CustomColumnMethod |
|
| CustomColumnParam |
|
| CustomImport |
|
| CustomImport.PropertyNames |
|
| CustomImportFile |
|
| DatabaseInstance |
|
| DatabaseModificationKind |
Stores the kind of database object that was modified and the kind of modification.
|
| DatabaseModificationKind.ObjectKind |
|
| DatabaseModificationKind.OperationKind |
|
| DataSet |
A class that provides uniform access to data set metadata (from the openBIS AS) and data (from the openBIS DSS).
|
| DataSet |
Immutable value object representing a data set.
|
| DataSet.Connections |
|
| DataSet.DataSetInitializer |
Class used to initialize a new data set instance.
|
| DataSetArchivingStatus |
Status of data set archiving process.
|
| DataSetAttributeSearchFieldKind |
Kinds of fields connected with Data Set attributes that can be used in detailed text queries.
|
| DataSetBatchUpdateDetails |
Holds information about which data set attributes should be updated.
|
| DataSetCodeId |
Identifies a data set by code.
|
| DataSetCodeId |
Identifies a data set by code.
|
| DataSetDss |
|
| DataSetFetchOption |
|
| DataSetFetchOptions |
|
| DataSetFileBlastSearchResultLocation |
|
| DataSetFileDTO |
Represents a reference to a file/folder within a data set.
|
| DataSetFileSearchResultLocation |
Result location for a search in a sequence in a file in data set.
|
| DatasetImageOverviewUtilities |
|
| DataSetKind |
Enumeration of all possible data set kinds.
|
| DataSetKind |
|
| DatasetLocation |
Encapsulates location and code of a data set in a store.
|
| DatasetLocationNode |
|
| DataSetRelatedEntities |
Encapsulates entities related to data sets.
|
| DataSetRelationshipRole |
|
| DataSetTechIdId |
Identifies a data set by tech id.
|
| DataSetTechIdId |
Identifies a data set by tech id.
|
| DataSetType |
Immutable value object representing a data set type.
|
| DataSetType |
The GWT equivalent to DataSetTypePE.
|
| DataSetType.DataSetTypeInitializer |
|
| DataSetTypeFilter |
A class that filters out data set types based on a whitelist or blacklist.
|
| DataSetTypePropertyType |
|
| DataSetTypeWithVocabularyTerms |
|
| DataSetUpdateResult |
Stores result of data set update.
|
| DataSetUploadInfo |
|
| DataSetUploadInfo.DataSetUploadInfoHelper |
|
| DataStore |
|
| DataStore |
|
| DataStoreApiUrlUtilities |
|
| DatastoreServiceDescription |
Description of one datastore server plugin task: key, label, dataset type codes.
|
| DataStoreServiceKind |
|
| DataStoreURLForDataSets |
The data store URL for a set of data sets.
|
| DataType |
A class that represents a data type.
|
| DataTypeCode |
Available types of entity properties.
|
| DateTableCell |
Table cell wrapping a Date.
|
| DefaultRetryConfiguration |
|
| DeletedDataSet |
Describes a deleted data set.
|
| DeletedDataSetLocation |
|
| DeletedEntity |
|
| DeletedEntity |
|
| Deletion |
|
| Deletion |
Information about deletion.
|
| DeletionFetchOption |
|
| DeletionType |
Types of deletion operations.
|
| DeletionType |
Types of deletion operations.
|
| DeletionUtils |
|
| DetailedSearchCriteria |
Describes detailed search criteria specific to an entity.
|
| DetailedSearchCriterion |
|
| DetailedSearchField |
Full specification of the field connected with an entity which can be used in detailed text queries.
|
| DetailedSearchFieldKind |
General kinds of fields that can be used in detailed text query for an entity.
|
| DetailedSearchSubCriteria |
Describes detailed search sub criteria for specified associated entity kind.
|
| DetailViewConfiguration |
Entity detail view configuration.
|
| DisplaySettings |
Class storing personalized display settings.
|
| DoNotEscape |
An annotation for marking an object that should not be escaped when returned to the client from server.
|
| DoubleTableCell |
Table cell wrapping a number of type double.
|
| DssComponent |
Implementation of the IDssComponent interface.
|
| DssComponentFactory |
A class that creates DssComponents.
|
| DssLinkTableCell |
A table cell for links to the dss.
|
| DssServiceRpcFactory |
Client-side factory for DssServiceRpc objects.
|
| DynamicPropertyEvaluationInfo |
|
| EntityHistory |
|
| EntityKind |
|
| EntityKind |
The GWT counterpart to EntityKind.
|
| EntityKindAndTypeCode |
|
| EntityOperationsState |
The state of the entity operations registration process.
|
| EntityProperty |
The generic entity property.
|
| EntityPropertyBlastSearchResultLocation |
|
| EntityPropertySearchResultLocation |
Result location for a search in a sequence in an entity property.
|
| EntityReference |
Reference to an entity with minimal information to uniquely identify it in the database and to choose the right plugin to handle it.
|
| EntityRegistrationDetails |
A class that encapsulates the details about entity registration.
|
| EntityRegistrationDetails.EntityRegistrationDetailsInitializer |
Class used to initialize an EntityRegistrationDetails object.
|
| EntityTableCell |
Table cell for an entity link.
|
| EntityType |
Common attributes of all entity types.
|
| EntityType |
An abstract entity type.
|
| EntityTypeInitializer |
Generic part of all entity type initializers.
|
| EntityTypePermIdId |
Identifies an entity type by perm id.
|
| EntityTypePropertyType<T extends EntityType> |
An abstract entity type property type.
|
| EntityValidationEvaluationInfo |
|
| EntityVisit |
Visit of an entity.
|
| EntityVisitComparatorByTimeStamp |
|
| EnvironmentFailureException |
The EnvironmentFailureException is the super class of all exceptions that have their cause in the software or hardware environment of
the system failing.
|
| ExceptionUtils |
Provides utilities for manipulating and examining Throwable objects.
|
| ExceptionWithStatus |
|
| Experiment |
Immutable value object representing an experiment.
|
| Experiment |
The GWT equivalent to ExperimentPE.
|
| Experiment.ExperimentInitializer |
Class used to initialize a new experiment instance.
|
| ExperimentAttributeSearchFieldKind |
Kinds of fields connected with Experiment attributes that can be used in detailed text queries.
|
| ExperimentBatchUpdateDetails |
Holds information about which experiment attributes should be updated.
|
| ExperimentFetchOption |
|
| ExperimentFetchOptions |
|
| ExperimentIdentifierId |
Identifies an experiment by identifier.
|
| ExperimentIdentifierId |
Identifies an experiment by identifier.
|
| ExperimentPermIdId |
Identifies an experiment by perm id.
|
| ExperimentPermIdId |
Identifies an experiment by perm id.
|
| ExperimentTechIdId |
Identifies an experiment by tech id.
|
| ExperimentTechIdId |
Identifies an experiment by tech id.
|
| ExperimentType |
Immutable value object representing an experiment type.
|
| ExperimentType |
The GWT equivalent to ExperimentTypePE.
|
| ExperimentType.ExperimentTypeInitializer |
|
| ExperimentTypePropertyType |
|
| ExperimentUpdateResult |
Stores result of experiment update.
|
| ExperimentUpdates |
Description of the updates which should be performed on the experiment.
|
| ExpressionUtil |
Useful static methods for expressions.
|
| ExternalDataLocationNode |
|
| ExternalDataManagementSystem |
|
| ExternalDataManagementSystemType |
|
| FacadeFactory |
|
| FetchOption |
|
| FetchOptions<T extends FetchOption> |
|
| FileExistsException |
An exception indicating that an output file already exists.
|
| FileFormatType |
The GWT equivalent to FileFormatTypePE.
|
| FileInfoDssBuilder |
Helper Class for creating FileInfoDss objects based on file system.
|
| FileInfoDssDownloader |
Utility class for downloading an array of file infos.
|
| FileInfoDssDownloader.FileInfoDssDownloaderListener |
Interface for listeners to events from the downloader.
|
| FileInfoDssDTO |
Represents information about a file stored in DSS.
|
| FileSystemContentCopy |
|
| GeneratedImageTableCell |
A Table Cell that is used for generated images.
|
| GenericEntityProperty |
A IEntityProperty class that only stores the generic value, but not a vocabulary term value or a material value.
|
| GenericJsonClassValueToClassObjectsMapping |
|
| GenericObjectMapper |
Jackson library object mapper used in generic OpenBIS.
|
| GenericSharedConstants |
Some public shared constants.
|
| Grantee |
Role grantee.
|
| Grantee.GranteeType |
|
| GridCustomColumn |
Stores information describing the grid custom column.
|
| GridCustomColumnValue |
Stores grid custom column id and value.
|
| GridCustomFilter |
Stores information describing a grid custom filter.
|
| GridRowModel<T> |
Stores the original object which will be a basis to calculate a grid row together with calculated all custom columns values.
|
| GroupByMap<K,E> |
A map which groups all elements added at the same key.
|
| HierarchicalFileInfoDssBuilder |
Helper Class for creating FileInfoDss objects based on file system abstraction.
|
| HighLevelException |
An exception that is "high-level" in the sense that we have a pretty good understanding what the failure means in the context where the exception
has been thrown.
|
| HttpInvokerBasedServiceStubFactory |
Implementation of the service stub factory based on Spring's HttpInvoker.
|
| HttpInvokerUtils |
Utility methods for HTTP Invocations.
|
| IAttachmentHolder |
|
| IAttributeSearchFieldKind |
Kind of field connected with an entity attribute that can be used in detailed text queries.
|
| ICodeHolder |
A code holder.
|
| IColumnDefinition<T> |
Describes table column's metadata.
|
| IContentCopy |
|
| IDataSetDss |
The representation of a Data Set managed by a DSS server.
|
| IDataSetFilter |
Interface filters of DataSet instances.
|
| IDataSetId |
Holds information that uniquely identifies a data set in openBIS.
|
| IDataSetId |
Holds information that uniquely identifies a data set in openBIS.
|
| IDatasetLocation |
Encapsulates location and code of a data set in a store.
|
| IDatasetLocationNode |
Stores information about a location of a data set and its components.
|
| IDeletedDataSetLocation |
|
| IDeletionProvider |
|
| Identifier<T extends Identifier<T>> |
An identifier.
|
| Identifier.IdentifierHolderComparator |
|
| IdentifierExtractor |
|
| IDisplaySettingsUpdate |
A command that updates or creates a new display settings object.
|
| IDssComponent |
A component that manages a connection to openBIS and 1 or more data store servers.
|
| IDssServiceRpcGeneric |
Generic functionality for interacting with the DSS.
|
| IEntityInformationHolder |
A unique pointer to an entity (see EntityKind for different kinds of entities).
Specifies entity technical id, code, type code and EntityKind .
|
| IEntityInformationHolderWithIdentifier |
|
| IEntityInformationHolderWithPermId |
|
| IEntityInformationHolderWithProperties |
|
| IEntityPropertiesHolder |
Stores properties of the entity.
|
| IEntityProperty |
An interface for entity properties.
|
| IEntityTypeId |
Holds information that uniquely identifies an entity type in openBIS.
|
| IEntityWithDeletionInformation |
|
| IExperimentId |
Holds information that uniquely identifies an experiment in openBIS.
|
| IExperimentId |
Holds information that uniquely identifies an experiment in openBIS.
|
| IExpressionUpdates |
Description of the updates which should be performed on a stored expression (e.g.
|
| IGeneralInformationChangingService |
Service for changing general informations.
|
| IGeneralInformationService |
Service for retrieving general informations.
|
| IGroupKeyExtractor<K,E> |
Interface defining the role of a key extractor.
|
| IIdAndCodeHolder |
Read-only interface for beans witch provide a code and a unique technical ID.
|
| IIdentifierHolder |
An identifier holder.
|
| IIdentityHolder |
|
| IIdHolder |
Read-only interface for beans with a unique technical Id.
|
| IIsStub |
|
| ImageResolutionKind |
|
| ImageTableCell |
|
| IManagedInputWidgetDescription |
Interface implemented by objects describing an input UI element (text field, combo box).
|
| IManagedInputWidgetDescriptionFactory |
|
| IManagedOutputWidgetDescription |
Interface implemented by objects describing an output UI element (table, label).
|
| IManagedProperty |
Interface implemented by managed property.
|
| IManagedPropertyGridInformationProvider |
|
| IManagedUiAction |
Description of action that a user can perform on the client side.
|
| IManagedUiDescription |
The interface exposed to the Managed Property script.
|
| IManagedUiTableAction |
|
| IMaterialId |
Holds information that uniquely identifies a material in openBIS.
|
| IMaterialId |
Holds information that uniquely identifies a material in openBIS.
|
| IMetaprojectId |
Holds information that uniquely identifies a metaproject in openBIS.
|
| IMetaprojectId |
Holds information that uniquely identifies a metaproject in openBIS.
|
| IMetaprojectRegistration |
A metaproject to register.
|
| IMetaprojectUpdates |
Description of updates which should be performed on a metaproject.
|
| IncompatibleAPIVersionsException |
Exception that is thrown if the client can not talk to the server because of API version incompatibility.
|
| IntegerTableCell |
Table cell wrapping a number of integer type.
|
| InternalErr |
Exception representing internal error in the program caused by programmer error.
|
| InvalidAuthenticationException |
Exception to be thrown when authentication of a service at another service fails.
|
| InvalidExternalDataException |
Data provided to the system from another system is invalid.
|
| InvalidSessionException |
This UserFailureException extension signals that a session has expired.
|
| IObjectId |
Holds information that uniquely identifies an object in openBIS.
|
| IObjectId |
Holds information that uniquely identifies an object in openBIS.
|
| IOpenbisServiceFacade |
Provides a fully-blown API for openBIS integration.
|
| IOpenbisServiceFacadeFactory |
|
| IPermIdHolder |
Interface for beans containing permanent id.
|
| IPerson |
Representation of a user, e.g.
|
| IProjectId |
Holds information that uniquely identifies a project in openBIS.
|
| IProjectId |
Holds information that uniquely identifies a project in openBIS.
|
| IPropertiesBean |
Interface implemented by beans with properties attribute.
|
| IPropertyTypeUpdates |
Description of the updates which should be performed on a property type.
|
| IQueryApiFacade |
Facade for openBIS query service.
|
| IQueryApiServer |
Public API interface to query server (version 1.4).
|
| IRegistratorAndModifierHolder |
Interface of DTOs having a modifier attribute.
|
| IRegistratorHolder |
Interface of DTOs having a registrator attribute.
|
| IReportInformationProvider |
|
| IRpcService |
The most generic interface for RPC invocations into openBIS.
|
| IRpcServiceFactory |
A factory for creating proxies to RPC services on a data store server.
|
| IRpcServiceNameServer |
An Interface for finding out about the IRpcService interfaces supported by a server.
|
| ISampleId |
Holds information that uniquely identifies a sample in openBIS.
|
| ISampleId |
Holds information that uniquely identifies a sample in openBIS.
|
| IScriptUpdates |
Description of the updates which should be performed on a script.
|
| ISearchDomainResultLocation |
Marker interface specifying the location of search result on a search domain.
|
| ISearchDomainResultScore |
Basic interface of classes specifying a score of search domain result.
|
| ISearchFieldAvailability |
Controls availability of a search field.
|
| ISearchFieldCriterionFactory |
Creates a criterion for a search field.
|
| ISearchFieldKind |
Kind of field that can be used in detailed text queries.
|
| ISerializableComparable |
Interface for objects which are comparable, java.io.Serializable and GWT serializable.
|
| IServicePinger<S> |
Interface of classes which know how to ping a specified remote service.
|
| IServiceStubFactory |
Factory which creates a stub for the specified service class.
|
| ISimpleOpenbisServiceFacade |
Provides a simplified view of an openBIS backend by allowing the following operations :
|
| ISpaceId |
Holds information that uniquely identifies a space in openBIS.
|
| ISpaceUpdates |
Description of the updates which should be performed on a property type.
|
| ITableModel |
Interface implemented by table models.
|
| ITableModelTransformation |
|
| ITaggable |
|
| IVocabularyTermUpdates |
Description of the updates which should be performed on a vocabulary term.
|
| IVocabularyUpdates |
Description of the updates which should be performed on the vocabulary.
|
| IWebInformationService |
Service for retrieving web information.
|
| JsonBaseTypeToSubTypesMapping |
|
| JsonPropertyUtil |
|
| JsonPropertyUtil |
|
| LastModificationState |
Stores information about the time and DatabaseModificationKind of the last modification, separately for each kind of database object.
|
| LinkDataSet |
A virtual data set storing the reference to the data set in external data management system.
|
| LinkDataSetLocation |
|
| LinkDataSetUrl |
|
| LinkModel |
A model for reporting plug-ins of type DSS_LINK.
|
| LinkModel.LinkParameter |
|
| LinkTableCell |
|
| ListDataSetByPropertyCriteria |
|
| ListMaterialCriteria |
Criteria for listing materials.
|
| ListOrSearchSampleCriteria |
Extended ListSampleCriteria with 2 new filter options:
detailed sample search
tracking new samples of particular type
Additionally one can decide if dependent samples that are loaded (parents and containers) should be enriched with properties.
|
| ListSampleCriteria |
Criteria for listing samples.
|
| LocatorType |
The GWT equivalent to LocatorTypePE.
|
| ManagedComboBoxInputWidgetDescription |
|
| ManagedEntityProperty |
|
| ManagedHtmlWidgetDescription |
|
| ManagedInputFieldType |
|
| ManagedInputWidgetDescription |
|
| ManagedMultilineTextInputWidgetDescription |
|
| ManagedOutputWidgetType |
|
| ManagedProperty |
A holder of information specific to a managed property value.
|
| ManagedTableActionRowSelectionType |
Selection modes of table actions.
|
| ManagedTableWidgetDescription |
|
| ManagedTextInputWidgetDescription |
|
| ManagedUiActionDescription |
Object that declaratively describes a UI for an action (e.g.
|
| ManagedUiActionDescriptionFactory |
|
| ManagedUiDescription |
Object that declaratively describes a UI (labels, fields, their ordering, table content).
|
| ManagedUiTableActionDescription |
Object that declaratively describes a UI for an action related to a table (e.g.
|
| MasqueradingException |
A RuntimeException extension which almost clones given rootException without saving it as cause.
|
| MatchingEntity |
An entity that matches the Hibernate Search query and which has been returned by the server.
|
| MatchingEntityTableCell |
Table cell wrapping a "MatchingEntity".
|
| Material |
|
| Material |
The GWT equivalent to MaterialPE.
|
| Material.MaterialInitializer |
|
| MaterialAttributeSearchFieldKind |
Kinds of fields connected with Material attributes that can be used in detailed text queries.
|
| MaterialBatchUpdateResultMessage |
|
| MaterialBuilder |
|
| MaterialCodeAndTypeCodeId |
Identifies a material by code and material type code.
|
| MaterialCodeAndTypeCodeId |
Identifies a material by code and material type code.
|
| MaterialCodeConverter |
Methods to convert material codes from business layer to database and from database to business layer.
|
| MaterialEntityProperty |
A IEntityProperty class that only stores the material value, but not a generic value or a vocabulary term value.
|
| MaterialIdentifier |
|
| MaterialIdentifier |
Identifier for searching material through Web Service lookup methods in the database.
|
| MaterialTechIdId |
Identifies a material by tech id.
|
| MaterialTechIdId |
Identifies a material by tech id.
|
| MaterialType |
The GWT equivalent to MaterialTypePE.
|
| MaterialTypeIdentifier |
duplicated from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier
|
| MaterialTypePropertyType |
|
| Metaproject |
|
| MetaprojectAssignments |
|
| MetaprojectAssignments |
|
| MetaprojectAssignmentsCount |
|
| MetaprojectAssignmentsFetchOption |
|
| MetaprojectAssignmentsIds |
|
| MetaprojectAssignmentsIds |
|
| MetaprojectCriteria |
|
| MetaprojectIdentifier |
Metaproject identifier representation.
|
| MetaprojectIdentifierId |
Identifies a metaproject by identifier.
|
| MetaprojectIdentifierId |
Identifies a metaproject by identifier.
|
| MetaprojectName |
Metaproject name representation.
|
| MetaprojectNameConstants |
|
| MetaprojectNullRegistration |
A metaproject registration implementation that returns null values for all fields.
|
| MetaprojectNullUpdates |
A metaproject updates implementation that returns null values for all fields.
|
| MetaprojectTechIdId |
Identifies a metaproject by tech id.
|
| MetaprojectTechIdId |
Identifies a metaproject by tech id.
|
| MinimalMinorVersion |
The minimal minor version that a service needs to have in order to possess this method.
|
| NewAttachment |
An attachment to register.
|
| NewAuthorizationGroup |
Details of new authorization group.
|
| NewBasicExperiment |
A experiment to register.
|
| NewColumnOrFilter |
A custom grid filter or column to register.
|
| NewDataSet |
Basic information about data set.
|
| NewDataSetDTO |
Represents a new data set that the DSS should register.
|
| NewDataSetDTO.DataSetOwner |
The identifier of the owner of the new data set.
|
| NewDataSetDTO.DataSetOwnerType |
The different types of owners of data sets; there are two: experiment and sample.
|
| NewDataSetDTOBuilder |
A mutable object for building NewDataSetDTO objects.
|
| NewDataSetMetadataDTO |
Represents optional metadata (data set type and properties) of a new data set that the DSS should register.
|
| NewDataSetsWithTypes |
Contains a list of data sets and their type.
|
| NewEntitiesWithTypes<T extends EntityType,E extends java.io.Serializable> |
Contains a list of new entities and their type.
|
| NewETNewPTAssigments |
|
| NewETPTAssignment |
Stores data needed to create new entity type-property type assignment.
|
| NewExperiment |
A experiment to register.
|
| NewExperimentsWithType |
Contains a list of new basic experiments and their type.
|
| NewExpression |
|
| NewMaterial |
A material to register.
|
| NewMaterialsWithTypes |
Contains a list of new materials and their type.
|
| NewMaterialWithType |
A material to register.
|
| NewMetaproject |
A metaproject to register.
|
| NewProject |
|
| NewPTNewAssigment |
|
| NewSample |
A sample to register.
|
| NewSamplesWithTypes |
Contains a list of new samples and their type.
|
| NewSpace |
|
| NewVocabulary |
New controlled vocabulary.
|
| NewVocabularyTerm |
A value object representing a new vocabulary term to be created by the openBIS backend.
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| NotImplementedException |
This is an extension to the RuntimeException for unimplemented methods.
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| NotImplementedException.StackTraceExtractor |
An automatic stack trace extractor.
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| Null |
Serializable null object.
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| ObjectIdentifierId |
Base class for ids that identify objects by identifier.
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| ObjectIdentifierId |
Base class for ids that identify objects by identifier.
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| ObjectMapperResource |
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| ObjectPermIdId |
Base class for ids that identify objects by perm id.
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| ObjectPermIdId |
Base class for ids that identify objects by perm id.
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| ObjectTechIdId |
Base class for ids that identify objects by tech id.
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| ObjectTechIdId |
Base class for ids that identify objects by tech id.
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| OpenbisServiceFacade |
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| OpenbisServiceFacadeFactory |
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| ParameterValue |
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| ParameterWithValue |
Stores parameter name and the value.
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| PermlinkUtilities |
Utility class to be used both on client and server side for permlink management.
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| Person |
The GWT equivalent PersonPE.
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| PersonAdapter |
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| PersonRole |
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| PersonRoles |
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| PersonTableCell |
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| PhysicalDataSet |
A physical data set, i.e.
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| PlaceholderDataSet |
Placeholder data sets are an abstraction pointing to a non-yet existing data set which is about to be created.
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| PluginType |
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| PortletConfiguration |
Configuration parameters of a portlet.
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| PrimitiveValue |
Stores one primitive value: Double, Long or String (null is represented as "" - PrimitiveValue.NULL).
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| Project |
Immutable value object representing a project.
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| Project |
The GWT equivalent to ProjectPE.
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| ProjectIdentifierId |
Identifies a project by identifier.
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| ProjectIdentifierId |
Identifies a project by identifier.
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| ProjectPermIdId |
Identifies a project by perm id.
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| ProjectPermIdId |
Identifies a project by perm id.
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| ProjectTechIdId |
Identifies a project by tech id.
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| ProjectTechIdId |
Identifies a project by tech id.
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| ProjectUpdates |
Client side description of the updates which should be performed on the project.
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| PropertiesBasedDataSetFilter |
Filter based on data set properties.
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| PropertyBuilder |
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| PropertyMatch |
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| PropertyType |
Immutable value object representing a property type.
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| PropertyType |
The GWT version of PropertyTypePE.
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| PropertyType.PropertyTypeInitializer |
Class used to initialize a new data set instance.
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| PropertyTypeGroup |
Immutable value object representing a data set type.
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| PropertyTypeGroup.PropertyTypeGroupInitializer |
Class used to initialize a new data set instance.
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| PropertyTypeWithVocabulary |
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| PropertyUpdates |
Updates of a single property.
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| QueryApiTest |
Example of usage of Query API.
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| QueryDescription |
Description of a query.
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| QueryTableColumn |
Column of query data.
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| QueryTableColumnDataType |
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| QueryTableModel |
Model of query data.
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| QueryType |
Type of query.
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| RealNumberFormatingParameters |
Parameters for formating real numbers in grids.
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| RelationshipType |
The GWT version of RelationshipTypePE.
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| ReportDescription |
Bean with basic meta data of a service offered by a Data Store Server.
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| ReportingPluginType |
Different kinds of reporting plug-ins that are supported.
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| ReportingPluginType.ImplementedPluginMethods |
An enum representing the methods implemented by the ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IReportingPluginTask interface.
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| ReportRowModel |
Model of a report row.
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| Retry |
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| RetryCaller<T,E extends java.lang.Throwable> |
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| RetryConfiguration |
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| RetryInterceptor |
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| RetryProxy |
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| RetryProxyFactory |
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| Role |
Immutable value object representing an authorization role.
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| RoleAssignment |
The DTO for authorization role assignments.
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| RoleWithHierarchy |
Hierarchical role.
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| RoleWithHierarchy.RoleCode |
Role codes corresponding to values stored in the database.
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| RoleWithHierarchy.RoleLevel |
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| RpcServiceInterfaceDTO |
Describes an RPC interface supported by the server.
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| RpcServiceInterfaceVersionDTO |
Describes an RPC interface supported by the server.
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| Sample |
Immutable value object representing a sample.
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| Sample |
Java Bean which contain information about sample.
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| Sample.SampleInitializer |
Class used to initialize a new sample instance.
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| SampleAttributeSearchFieldKind |
Kinds of fields connected with Sample attributes that can be used in detailed text queries.
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| SampleBatchUpdateDetails |
Holds information about which sample attributes should be updated.
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| SampleEntityProperty |
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| SampleFetchOption |
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| SampleIdentifierId |
Identifies a sample by identifier.
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| SampleIdentifierId |
Identifies a sample by identifier.
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| SampleParentWithDerived |
A SampleParentWithDerived encapsulates a Sample (the parent) and its derived Samples.
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| SamplePermIdId |
Identifies a sample by perm id.
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| SamplePermIdId |
Identifies a sample by perm id.
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| SampleTechIdId |
Identifies a sample by tech id.
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| SampleTechIdId |
Identifies a sample by tech id.
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| SampleType |
Immutable value object representing a sample type.
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| SampleType |
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| SampleType.SampleTypeInitializer |
Class used to initialize a new SampleType instance.
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| SampleTypePropertyType |
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| SampleUpdateResult |
Stores result of sample update.
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| Script |
The GWT equivalent to ScriptPE.
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| ScriptType |
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| ScriptUpdateResult |
Stores result of script update.
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| SearchableEntityKind |
An enum listing the different kinds of entities that are searchable.
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| SearchCriteria |
A (mutable) object representing the specification of a search.
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| SearchCriteria.AnyFieldMatchClause |
A MatchClause for checking that any of the properties or attributes equals a desired value.
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| SearchCriteria.AnyPropertyMatchClause |
A MatchClause for checking that any of the properties equals a desired value.
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| SearchCriteria.AttributeMatchClause |
A MatchClause for checking that an attribute equals a desired value.
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| SearchCriteria.CompareMode |
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| SearchCriteria.MatchClause |
A specification of one field (either property or attribute) and desired value for that field.
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| SearchCriteria.MatchClauseAttribute |
An enum listing the different attributes that can be compared against.
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| SearchCriteria.MatchClauseFieldType |
An enum listing the different field types that can be compared against.
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| SearchCriteria.MatchClauseTimeAttribute |
An enum listing the different attributes containing time values that can be compared against.
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| SearchCriteria.PropertyMatchClause |
A MatchClause for checking that a property equals a desired value.
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| SearchCriteria.SearchOperator |
Operators for combining MatchClause objects.
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| SearchCriteria.TimeAttributeMatchClause |
A MatchClause for comparing a time attribute to a specified value.
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| SearchCriteriaConnection |
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| SearchDomain |
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| SearchDomainSearchOption |
Search option of a Search Domain.
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| SearchDomainSearchResult |
Result of a search on a search domain.
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| SearchDomainSearchResultWithFullEntity |
Result of a search in a search domain.
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| SearchFieldAvailableForAdmins |
Makes a search field available for an admin used.
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| SearchFieldBooleanCriterionFactory |
Creates a criterion for a boolean field.
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| SearchFieldDateCriterionFactory |
Creates a criterion for a date field.
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| SearchlinkUtilities |
Utility class for the format of URLs that imply searches.
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| SearchSubCriteria |
A specification of criteria for a subquery about a connected entity.
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| SerializableComparableIDDecorator |
|
| ServiceFinder |
Helper to find a remote service exported by Spring's HttpInvoker or any other way for which
an implementation of IServiceStubFactory exists.
|
| ServiceVersionHolder |
Stores interface version.
|
| SessionConstants |
Some session constants.
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| ShareInfo |
Information about a share.
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| SimpleAttributeSearchFieldKind |
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| SimpleDateRenderer |
This class is able to render a data in a fix format both at GWT side and at the server side.
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| SimpleImageHtmlRenderer |
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| SimplePersonRenderer |
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| SimpleYesNoRenderer |
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| SortInfo |
Aggregates sort field and sort direction.
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| SortInfo.SortDir |
Sort direction enumeration.
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| SourceType |
The type of source represented by given Sample id.
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| Space |
The GWT equivalent to GroupPE.
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| SpacePermIdId |
Identifies a space by perm id.
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| SpaceWithProjectsAndRoleAssignments |
Bean which represents a space, all its projects, and all its relevant role assignments
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| Span |
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| StandardPortletNames |
Names of standard portlets.
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| StaticRetryConfiguration |
|
| Status |
A class that holds the information about the status of an operation.
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| StatusFlag |
The status of an operation.
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| StatusWithResult<T> |
A Status that can also hold a result.
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| StringTableCell |
Table cell wrapping a string.
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| SystemExitException |
Thrown by SystemExit instead of plain RuntimeException
|
| TableCellUtil |
Utility functions for table cells.
|
| TableModel |
A table with a list of rows and columns specification.
|
| TableModelAppender |
|
| TableModelAppender.IllegalTableModelException |
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| TableModelAppender.TableModelWithDifferentColumnCountException |
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| TableModelAppender.TableModelWithDifferentColumnIdsException |
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| TableModelAppender.TableModelWithIncompatibleColumnTypesException |
|
| TableModelColumnHeader |
|
| TableModelRow |
The content of one row, without the header specification.
|
| TableModelRowWithObject<T extends java.io.Serializable> |
|
| TechId |
Technical identifier of an entity.
|
| TrackingDataSetCriteria |
Criteria for tracking data sets with technical id bigger than the specified one.
|
| TrackingSampleCriteria |
Criteria for tracking samples of particular type with certain property set to specified value.
|
| Translator |
|
| TypeBasedDataSetFilter |
Filter which will be passed only by data sets with a data set type code matching a certain regular expression.
|
| TypedStringValue |
A bean that stores a primitive value as a string with a type.
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| TypedTableGridColumnDefinition<T extends java.io.Serializable> |
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| TypedTableModel<T extends java.io.Serializable> |
Table model for TypedTableGrid classes.
|
| UnknownLastChangedException |
Used to signal the error of getting last modification time of a store item
|
| UpdatedBasicExperiment |
|
| UpdatedDataSet |
|
| UpdatedExperimentsWithType |
Contains a list of new basic experiments and their type.
|
| UpdatedSample |
A sample to update.
|
| UpdatedVocabularyTerm |
A vocabulary term to update.
|
| UploadObserver |
|
| UrlContentCopy |
|
| URLMethodWithParameters |
Helper class to create URL's with parameters.
|
| UserFailureException |
The UserFailureException is the super class of all exceptions that have their cause in an inappropriate usage of the system.
|
| ValidationError |
|
| ValidationError.ValidationErrorTarget |
|
| ValidationException |
Exception thrown by jython scripts in case of invalid input.
|
| ValidationPluginInfo |
Value object with name and optional description of a validation plugin.
|
| ValidationScriptReader |
A helper class that reads validation scripts.
|
| ValidationScriptRunner |
|
| ValidationScriptRunner.NullValidationScriptRunner |
|
| ValidationUtilities |
Utility class to be used both on client and server side for field validation.
|
| ValidationUtilities.HyperlinkValidationHelper |
A helper class for external hyperlink validation.
|
| ViewMode |
|
| Vocabulary |
Immutable value object representing an openBIS vocabulary.
|
| Vocabulary |
Controlled vocabulary.
|
| Vocabulary.VocabularyInitializer |
|
| VocabularyTerm |
|
| VocabularyTerm |
A vocabulary term.
|
| VocabularyTermBatchUpdateDetails |
Holds information about which vocabulary term attributes should be updated.
|
| VocabularyTermEntityProperty |
A IEntityProperty class that only stores the vocabulary term value, but not a generic value or a material value.
|
| VocabularyTermGridIDs |
|
| VocabularyTermReplacement |
|
| VocabularyTermTableCell |
|
| VocabularyTermWithStats |
Vocabulary term and its usage statistics.
|
| WebApp |
Information about a web application.
|
| WebAppContext |
Contexts in which web applications are available in OpenBIS.
|
| WebAppProperties |
|
| WebAppProperty |
Properties for configuration of web applications in OpenBIS.
|
| WebAppSettings |
A map containing persistent settings for an openBIS web app.
|
| WebAppsProperties |
|
| WebClientConfiguration |
Stores Web Client configuration.
|
| WildcardSupportingMap<T> |
Utility class that manages mappings from entity types/codes (possibly including wildcards) to IServerPlugin objects.
|