Interface IDataSetRegistrationTransactionV2
-
- All Known Implementing Classes:
DataSetRegistrationTransaction
,DataSetRegistrationTransactionV2Delegate
public interface IDataSetRegistrationTransactionV2
-
-
Method Summary
All Methods Instance Methods Abstract Methods Deprecated Methods Modifier and Type Method Description void
assignRoleToSpace(ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode role, ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable space, java.util.List<java.lang.String> userIds, java.util.List<java.lang.String> groupCodes)
Give users and/or groups access privileges to a space.IDataSet
createNewDataSet()
Create a new data set for registration in openBIS.IDataSet
createNewDataSet(java.lang.String dataSetType)
Create a new data set with the specified code.IDataSet
createNewDataSet(java.lang.String dataSetType, ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetKind datasetKindOrNull)
IDataSet
createNewDataSet(java.lang.String dataSetType, java.lang.String dataSetCode)
Create a new data set with the specified type and code.IDataSet
createNewDataSet(java.lang.String dataSetType, java.lang.String dataSetCode, ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetKind datasetKindOrNull)
java.lang.String
createNewDirectory(IDataSet dst, java.lang.String dirName)
Create a new directory and return the path.IExperiment
createNewExperiment(java.lang.String experimentIdentifierString, java.lang.String experimentTypeCode)
Create a new experiment to register with the openBIS AS.java.lang.String
createNewFile(IDataSet dst, java.lang.String fileName)
Create a new empty file and return the path.java.lang.String
createNewFile(IDataSet dst, java.lang.String dstInDataset, java.lang.String fileName)
Create a new empty file and return the path.java.lang.String
createNewLink(IDataSet dst, java.lang.String dstInDataset, java.lang.String linkName, java.lang.String linkTarget)
Create a new symbolic link and return the path.IMaterial
createNewMaterial(java.lang.String materialCode, java.lang.String materialType)
Create a new material to register with the openBIS AS.IMetaproject
createNewMetaproject(java.lang.String name, java.lang.String description)
Creates the new metaproject for the current user.IMetaproject
createNewMetaproject(java.lang.String name, java.lang.String description, java.lang.String ownerId)
Creates the new metaproject for the specified user.IProject
createNewProject(java.lang.String projectIdentifier)
Create a new project to register with the openBIS AS.ISample
createNewProjectSampleWithGeneratedCode(java.lang.String projectIdentifier, java.lang.String sampleTypeCode)
Create a new project sample to register with the openBIS AS.ISample
createNewSample(java.lang.String sampleIdentifierString, java.lang.String sampleTypeCode)
Create a new sample to register with the openBIS AS.ISample
createNewSampleWithGeneratedCode(java.lang.String spaceCode, java.lang.String sampleTypeCode)
Create a new sample to register with the openBIS AS.ISpace
createNewSpace(java.lang.String spaceCode, java.lang.String spaceAdminUserIdOrNull)
Create a new space to register with the openBIS AS.IVocabularyTerm
createNewVocabularyTerm()
Creates a new vocabulary term, which has to be assigned to aIVocabulary
.java.io.InputStream
getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns an experiment attachment content.java.io.InputStream
getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns a project attachment content.java.io.InputStream
getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns a sample attachment content.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization.IAuthorizationService
getAuthorizationService()
net.lemnik.eodsql.DynamicTransactionQuery
getDatabaseQuery(java.lang.String dataSourceName)
Gets a database query object for the data source with the specified name.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IDataSetImmutable
getDataSet(java.lang.String dataSetCode)
Deprecated.IDataSetUpdatable
getDataSetForUpdate(java.lang.String dataSetCode)
Get a data set from the openBIS AS for the purpose of modifying it.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable
getExperiment(java.lang.String experimentIdentifierString)
Deprecated.IExperimentUpdatable
getExperimentForUpdate(java.lang.String experimentIdentifierString)
Get an experiment from the openBIS AS for the purpose of modifying it.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExternalDataManagementSystemImmutable
getExternalDataManagementSystem(java.lang.String externalDataManagementSystemCode)
Get an external data management system from the openBIS AS.ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState
getGlobalState()
java.io.File
getIncoming()
Returns the file representing the logical incoming file.IDSSRegistrationLogger
getLogger()
Returns the logger object that logs messages to openbis operation log and data store server registration logs.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable
getMaterial(java.lang.String identifier)
Deprecated.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable
getMaterial(java.lang.String materialCode, java.lang.String materialType)
Get a material from the openBIS AS.IMaterial
getMaterialForUpdate(java.lang.String identifier)
Get a material from the openBIS AS for the purpose of modifying it.IMaterial
getMaterialForUpdate(java.lang.String materialCode, java.lang.String materialType)
Get a material from the openBIS AS for the purpose of modifying it.IMetaproject
getMetaproject(java.lang.String name)
Only allowed when the user is available.IMetaproject
getMetaproject(java.lang.String name, java.lang.String ownerId)
Only allowed when the user is not available.java.lang.String
getOpenBisServiceSessionToken()
Returns the currently used session token by the openBIS servicech.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable
getProject(java.lang.String projectIdentifier)
Deprecated.IProject
getProjectForUpdate(java.lang.String projectIdentifierString)
Get an project from the openBIS AS for the purpose of modifying it.ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationContext
getRegistrationContext()
Return a registration context object which can be used to store information that needs to be accessed through the registration process.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable
getSample(java.lang.String sampleIdentifierString)
Deprecated.ISample
getSampleForUpdate(java.lang.String sampleIdentifierString)
Get a sample from the openBIS AS for the purpose of modifying it.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService
getSearchService()
Retrieve the search service for this transaction.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService
getSearchServiceFilteredForUser(java.lang.String userId)
Retrieve the search service for this transaction.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService
getSearchServiceUnfiltered()
Retrieve the search service for this transaction.java.util.Map<java.lang.String,java.lang.String>
getServerInformation()
Returns information about the openBIS server.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable
getSpace(java.lang.String spaceCode)
Deprecated.java.lang.String
getUserId()
Get the id of the user on whose behalf this registration transaction is performed.ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IVocabularyImmutable
getVocabulary(java.lang.String code)
Deprecated.IVocabulary
getVocabularyForUpdate(java.lang.String code)
Get the vocabulary with given codejava.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable>
listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment)
Returns a list of experiment attachments with all versions.java.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable>
listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project)
Returns a list of project attachments with all versions.java.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable>
listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample)
Returns a list of sample attachments with all versions.IDataSetUpdatable
makeDataSetMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IDataSetImmutable dataSet)
Given an immutable data set, make it mutable.IExperimentUpdatable
makeExperimentMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment)
Given an immutable experiment, make it mutable.IMaterial
makeMaterialMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable material)
Given an immutable material, make it mutable.IProject
makeProjectMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project)
Given an immutable project, make it mutable.ISample
makeSampleMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample)
Given an immutable sample, make it mutable.java.lang.String
moveFile(java.lang.String src, IDataSet dst)
Move a file from into the root of a data set.java.lang.String
moveFile(java.lang.String src, IDataSet dst, java.lang.String dstInDataset)
Move a file to a specified location in a data set.void
revokeRoleFromSpace(ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode role, ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable space, java.util.List<java.lang.String> userIds, java.util.List<java.lang.String> groupCodes)
Take away users and/or groups access privileges to a space.void
setUserId(java.lang.String userIdOrNull)
Set the id of the user on whose behalf this registration transaction is performed.
-
-
-
Method Detail
-
createNewDataSet
IDataSet createNewDataSet()
Create a new data set for registration in openBIS.
-
createNewDataSet
IDataSet createNewDataSet(java.lang.String dataSetType)
Create a new data set with the specified code.
-
createNewDataSet
IDataSet createNewDataSet(java.lang.String dataSetType, ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetKind datasetKindOrNull)
-
createNewDataSet
IDataSet createNewDataSet(java.lang.String dataSetType, java.lang.String dataSetCode)
Create a new data set with the specified type and code.
-
createNewDataSet
IDataSet createNewDataSet(java.lang.String dataSetType, java.lang.String dataSetCode, ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetKind datasetKindOrNull)
-
getDataSet
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IDataSetImmutable getDataSet(java.lang.String dataSetCode)
Deprecated.Get a data set from the openBIS AS. Returns null if the data set does not exist.- Returns:
- A data set or null
-
getDataSetForUpdate
IDataSetUpdatable getDataSetForUpdate(java.lang.String dataSetCode)
Get a data set from the openBIS AS for the purpose of modifying it. Returns null if the data set does not exist.- Returns:
- A data set or null
-
makeDataSetMutable
IDataSetUpdatable makeDataSetMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IDataSetImmutable dataSet)
Given an immutable data set, make it mutable.- Returns:
- A data set
-
getSample
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable getSample(java.lang.String sampleIdentifierString)
Deprecated.Get a sample from the openBIS AS. Returns null if the sample does not exist.- Returns:
- A sample or null
-
getSampleForUpdate
ISample getSampleForUpdate(java.lang.String sampleIdentifierString)
Get a sample from the openBIS AS for the purpose of modifying it. Returns null if the sample does not exist.- Returns:
- A sample or null
-
makeSampleMutable
ISample makeSampleMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample)
Given an immutable sample, make it mutable.- Returns:
- A sample
-
createNewSample
ISample createNewSample(java.lang.String sampleIdentifierString, java.lang.String sampleTypeCode)
Create a new sample to register with the openBIS AS. The sample will have a permId.- Parameters:
sampleIdentifierString
- The identifier for the new samplesampleTypeCode
- The code of the type for the new sample
-
createNewSampleWithGeneratedCode
ISample createNewSampleWithGeneratedCode(java.lang.String spaceCode, java.lang.String sampleTypeCode)
Create a new sample to register with the openBIS AS. The sample will have a permId and automatically created identifier.- Parameters:
spaceCode
- The space in which to create the sample identifier for the new samplesampleTypeCode
- The code of the type for the new sample
-
createNewProjectSampleWithGeneratedCode
ISample createNewProjectSampleWithGeneratedCode(java.lang.String projectIdentifier, java.lang.String sampleTypeCode)
Create a new project sample to register with the openBIS AS. The sample will have a permId and automatically created identifier.- Parameters:
projectIdentifier
- The project in which to create the sample identifier for the new samplesampleTypeCode
- The code of the type for the new sample
-
getExperiment
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable getExperiment(java.lang.String experimentIdentifierString)
Deprecated.Get an experiment from the openBIS AS.
-
getExperimentForUpdate
IExperimentUpdatable getExperimentForUpdate(java.lang.String experimentIdentifierString)
Get an experiment from the openBIS AS for the purpose of modifying it.
-
makeExperimentMutable
IExperimentUpdatable makeExperimentMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment)
Given an immutable experiment, make it mutable.- Returns:
- An experiment
-
createNewExperiment
IExperiment createNewExperiment(java.lang.String experimentIdentifierString, java.lang.String experimentTypeCode)
Create a new experiment to register with the openBIS AS. The experiment will have a permId.- Parameters:
experimentIdentifierString
- The identifier for the new experimentexperimentTypeCode
- The code of the type for the new experiment
-
createNewProject
IProject createNewProject(java.lang.String projectIdentifier)
Create a new project to register with the openBIS AS.- Parameters:
projectIdentifier
- .
-
getProject
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable getProject(java.lang.String projectIdentifier)
Deprecated.Get a project from the openBIS AS. Returns null if the project does not exist.- Returns:
- A project or null
-
getProjectForUpdate
IProject getProjectForUpdate(java.lang.String projectIdentifierString)
Get an project from the openBIS AS for the purpose of modifying it.
-
makeProjectMutable
IProject makeProjectMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project)
Given an immutable project, make it mutable.- Returns:
- A mutable project.
-
createNewSpace
ISpace createNewSpace(java.lang.String spaceCode, java.lang.String spaceAdminUserIdOrNull)
Create a new space to register with the openBIS AS.- Parameters:
spaceCode
- the code of the spacespaceAdminUserIdOrNull
- the user id of the person, who will receive space admin priviliges.
-
getSpace
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable getSpace(java.lang.String spaceCode)
Deprecated.Get a space from the openBIS AS. Returns null if the space does not exist.- Returns:
- A space or null
-
getMaterial
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable getMaterial(java.lang.String materialCode, java.lang.String materialType)
Get a material from the openBIS AS. Returns null if the material does not exist.- Returns:
- A material or null
-
getMaterial
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable getMaterial(java.lang.String identifier)
Deprecated.Get a material from the openBIS AS. Returns null if the material does not exist.- Returns:
- A material or null
-
getMaterialForUpdate
IMaterial getMaterialForUpdate(java.lang.String materialCode, java.lang.String materialType)
Get a material from the openBIS AS for the purpose of modifying it. Returns null if the material does not exist.- Returns:
- A material or null
-
getMaterialForUpdate
IMaterial getMaterialForUpdate(java.lang.String identifier)
Get a material from the openBIS AS for the purpose of modifying it. Returns null if the material does not exist.- Returns:
- A material or null
-
makeMaterialMutable
IMaterial makeMaterialMutable(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IMaterialImmutable material)
Given an immutable material, make it mutable.- Returns:
- A material
-
createNewMaterial
IMaterial createNewMaterial(java.lang.String materialCode, java.lang.String materialType)
Create a new material to register with the openBIS AS.- Parameters:
materialCode
- the code of the materialmaterialType
- the type of the material
-
createNewMetaproject
IMetaproject createNewMetaproject(java.lang.String name, java.lang.String description)
Creates the new metaproject for the current user. Only allowed when there is a user available.
-
createNewMetaproject
IMetaproject createNewMetaproject(java.lang.String name, java.lang.String description, java.lang.String ownerId)
Creates the new metaproject for the specified user. Only allowed when there is no user available.
-
getMetaproject
IMetaproject getMetaproject(java.lang.String name)
Only allowed when the user is available.- Returns:
- metaproject with given name for current user.
-
getMetaproject
IMetaproject getMetaproject(java.lang.String name, java.lang.String ownerId)
Only allowed when the user is not available.- Returns:
- metaproject with given name for specified user.
-
getVocabulary
@Deprecated ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IVocabularyImmutable getVocabulary(java.lang.String code)
Deprecated.Get the read-only vocabulary with given code
-
getVocabularyForUpdate
IVocabulary getVocabularyForUpdate(java.lang.String code)
Get the vocabulary with given code
-
createNewVocabularyTerm
IVocabularyTerm createNewVocabularyTerm()
Creates a new vocabulary term, which has to be assigned to aIVocabulary
.
-
moveFile
java.lang.String moveFile(java.lang.String src, IDataSet dst)
Move a file from into the root of a data set.- Parameters:
src
- The path of the file to move.dst
- The data set to add the file to.- Returns:
- The absolute path after the move.
-
moveFile
java.lang.String moveFile(java.lang.String src, IDataSet dst, java.lang.String dstInDataset)
Move a file to a specified location in a data set. Any necessary intermediate folders are automatically created.- Parameters:
src
- The path of the file to move.dst
- The data set to add the file to.dstInDataset
- The path of the file in the data set- Returns:
- The absolute path after the move.
-
createNewDirectory
java.lang.String createNewDirectory(IDataSet dst, java.lang.String dirName)
Create a new directory and return the path.- Parameters:
dst
- The data set to add the file to.dirName
- The name of the new file to create. (Can be a simple file or directory.)- Returns:
- The absolute path of the new file.
-
createNewFile
java.lang.String createNewFile(IDataSet dst, java.lang.String fileName)
Create a new empty file and return the path.- Parameters:
dst
- The data set to add the file to.fileName
- The name of the new file to create. (Can be a simple file or directory.)- Returns:
- The absolute path of the new file.
-
createNewFile
java.lang.String createNewFile(IDataSet dst, java.lang.String dstInDataset, java.lang.String fileName)
Create a new empty file and return the path.- Parameters:
dst
- The data set to add the file to.dstInDataset
- The path of the file in the data setfileName
- The name of the new file to create. (Can be a simple file or directory.)- Returns:
- The absolute path of the new file.
-
createNewLink
java.lang.String createNewLink(IDataSet dst, java.lang.String dstInDataset, java.lang.String linkName, java.lang.String linkTarget)
Create a new symbolic link and return the path.- Parameters:
dst
- The data set to add the file to.dstInDataset
- The path of the file in the data setlinkName
- The name of the new link to createlinkTarget
- The path of file/directory the new link should point to- Returns:
- The absolute path of the new link.
-
getSearchService
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService getSearchService()
Retrieve the search service for this transaction. If the user is available for this transaction, then the search service results will be filtered for this user.- Returns:
- The search service for this transaction.
-
getSearchServiceUnfiltered
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService getSearchServiceUnfiltered()
Retrieve the search service for this transaction. It returns the results unfiltered by the user, even if the user is available.- Returns:
- The search service for this transaction.
-
getSearchServiceFilteredForUser
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISearchService getSearchServiceFilteredForUser(java.lang.String userId)
Retrieve the search service for this transaction. The search service results will be filtered for the specified user.- Returns:
- The search service for this transaction.
-
getAuthorizationService
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.authorization.IAuthorizationService getAuthorizationService()
- Returns:
- A service which can be used to get authorization information about a user.
-
getDatabaseQuery
net.lemnik.eodsql.DynamicTransactionQuery getDatabaseQuery(java.lang.String dataSourceName) throws java.lang.IllegalArgumentException
Gets a database query object for the data source with the specified name.After the rest of the transaction is committed, the queries are committed. Failures in these secondary queries are not fatal, but they are caught and the clients of the transaction are notified.
- Parameters:
dataSourceName
- The name of the data source to query against, as declared in the service.properties file.- Returns:
- The query.
- Throws:
java.lang.IllegalArgumentException
-
getRegistrationContext
ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationContext getRegistrationContext()
Return a registration context object which can be used to store information that needs to be accessed through the registration process.It is important to use this registration context, and not global variables, for communication between code in different parts of the registration process. This is because the registration process is not guaranteed to run in a single process.
- Returns:
- The context, a hash-map-like object.
-
getGlobalState
ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState getGlobalState()
- Returns:
- Global state for this dropbox, including configuration properties specified by the user.
-
getServerInformation
java.util.Map<java.lang.String,java.lang.String> getServerInformation()
Returns information about the openBIS server.
-
getIncoming
java.io.File getIncoming()
Returns the file representing the logical incoming file.
-
getUserId
java.lang.String getUserId()
Get the id of the user on whose behalf this registration transaction is performed.- Returns:
- A userId or null, if there is none.
-
setUserId
void setUserId(java.lang.String userIdOrNull)
Set the id of the user on whose behalf this registration transaction is performed.- Parameters:
userIdOrNull
- The id of a user or null if this transaction should be performed as the system (etlserver).
-
getExternalDataManagementSystem
ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExternalDataManagementSystemImmutable getExternalDataManagementSystem(java.lang.String externalDataManagementSystemCode)
Get an external data management system from the openBIS AS. Returns null if the object does not exist.- Returns:
- external data management system or null
-
assignRoleToSpace
void assignRoleToSpace(ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode role, ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable space, java.util.List<java.lang.String> userIds, java.util.List<java.lang.String> groupCodes)
Give users and/or groups access privileges to a space.
-
revokeRoleFromSpace
void revokeRoleFromSpace(ch.systemsx.cisd.openbis.generic.shared.basic.dto.RoleWithHierarchy.RoleCode role, ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISpaceImmutable space, java.util.List<java.lang.String> userIds, java.util.List<java.lang.String> groupCodes)
Take away users and/or groups access privileges to a space.
-
getAttachmentContent
java.io.InputStream getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns a project attachment content. If the version is not specified then the latest version of the attachment is returned. Returns null if the attachment does not exist.
-
getAttachmentContent
java.io.InputStream getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns an experiment attachment content. If the version is not specified then the latest version of the attachment is returned. Returns null if the attachment does not exist.
-
getAttachmentContent
java.io.InputStream getAttachmentContent(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample, java.lang.String fileName, java.lang.Integer versionOrNull)
Returns a sample attachment content. If the version is not specified then the latest version of the attachment is returned. Returns null if the attachment does not exist.
-
listAttachments
java.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable> listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IProjectImmutable project)
Returns a list of project attachments with all versions. Returns null if the project does not have any attachments.
-
listAttachments
java.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable> listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IExperimentImmutable experiment)
Returns a list of experiment attachments with all versions. Returns null if the experiment does not have any attachments.
-
listAttachments
java.util.List<ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.IAttachmentImmutable> listAttachments(ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v2.ISampleImmutable sample)
Returns a list of sample attachments with all versions. Returns null if the sample does not have any attachments.
-
getOpenBisServiceSessionToken
java.lang.String getOpenBisServiceSessionToken()
Returns the currently used session token by the openBIS service
-
getLogger
IDSSRegistrationLogger getLogger()
Returns the logger object that logs messages to openbis operation log and data store server registration logs.
-
-