{"id":3829,"date":"2023-01-27T16:52:21","date_gmt":"2023-01-27T16:52:21","guid":{"rendered":"https:\/\/openbis.ch\/?page_id=3829"},"modified":"2023-08-28T06:59:59","modified_gmt":"2023-08-28T06:59:59","slug":"openbis-ugm-2023","status":"publish","type":"page","link":"https:\/\/openbis.ch\/index.php\/openbis-ugm-2023\/","title":{"rendered":"openBIS UGM 2023"},"content":{"rendered":"<h4><\/h4>\n<p style=\"text-align: center;\"><span style=\"color: #000000;\">We are pleased to announce the <strong>openBIS User Group Meeting 2023<\/strong>.<\/span><\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: left;\"><span style=\"color: #000000;\"><strong>Date<\/strong>: 12-14 September 2023.<\/span><\/p>\n<p><strong>Location<\/strong>: HG building, ETH Zurich. R\u00e4mistrasse 101, 8092 Z\u00fcrich.<\/p>\n<p><a href=\"https:\/\/www.google.com\/maps\/place\/ETH+Z%C3%BCrich\/@47.3764761,8.5363413,15z\/data=!4m6!3m5!1s0x479aa0a6516e8cf7:0x4b61f428b6377607!8m2!3d47.3763889!4d8.547628!16zL20vMDFkeWs4?entry=ttu\" target=\"_blank\" rel=\"noopener noreferrer\">Google Maps<\/a><\/p>\n<p>&nbsp;<\/p>\n<p style=\"text-align: left;\"><img fetchpriority=\"high\" decoding=\"async\" class=\"aligncenter wp-image-4168 size-large\" src=\"https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-1024x1024.png\" alt=\"\" width=\"1024\" height=\"1024\" srcset=\"https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-1024x1024.png 1024w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-150x150.png 150w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-300x300.png 300w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-768x768.png 768w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-570x570.png 570w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-500x500.png 500w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-1000x1000.png 1000w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map-700x700.png 700w, https:\/\/openbis.ch\/wp-content\/uploads\/2023\/06\/ETH_map.png 1860w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/><\/p>\n<p>&nbsp;<\/p>\n<hr \/>\n<h1><\/h1>\n<h1><strong>Registration<\/strong><\/h1>\n<p>Registration for the event is now closed.<\/p>\n<p>&nbsp;<\/p>\n<h3>Registration fees<\/h3>\n<p>3-days attendance: 100CHF<\/p>\n<p>2-days attendance: 70CHF<\/p>\n<p>1-day attendance: 40CHF<\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<hr \/>\n<h1><\/h1>\n<h1>Contact<\/h1>\n<p>For any questions related to the event, please contact the openBIS support: <a href=\"mailto:openbis-support@id.ethz.ch\">openbis-support@id.ethz.ch\u00a0<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<hr \/>\n<p>&nbsp;<\/p>\n<h1>Program<\/h1>\n<p>&nbsp;<\/p>\n<h2><strong>Day 1: 12.09.2023<\/strong><\/h2>\n<h3>Location: ETHZ HG building, Room D5.2<\/h3>\n<p><strong>\u00a0<\/strong><strong>\u00a0<\/strong><\/p>\n<p>10:00-11:00 <strong>Registration &amp; coffee<\/strong><\/p>\n<p>&nbsp;<\/p>\n<p>11:00-11:10 <strong>Welcome &amp; introduction<\/strong>, Dr. Bernd Rinn<em>, ETHZ Scientific IT Services<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>11:10-11:35 <strong>Introducing openBIS at Empa with a focus on iPads<\/strong>, Anusch Bachofner and Stefanie Hauser<em>, Empa<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>11:35-12:00 <strong>Web application development for openBIS using Windmill<\/strong>, Dr. Simone Baffelli and Dr. Matthias R\u00f6sslein<em>, Empa<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>12:00-12:25 <strong>From Pilot to Rollout: Introducing the BAM Data Store for Institutional RDM in Materials Science<\/strong>, Dr. Rukeia El-Athman<em>, Bundesanstalt f\u00fcr Materialforschung und \u2013pr\u00fcfung (BAM)<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>12:30 -13:30 <strong>Lunch<\/strong><\/p>\n<p>&nbsp;<\/p>\n<p>13:30-13:55 <strong>openBIS @ Fraunhofer IWM: Creating an Infrastructure for Digitization<\/strong>, Dr. Heiko Hafok, <em>Fraunhofer-Institut f\u00fcr Werkstoffmechanik IWM<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>13:55-14:20<strong> Large-File Raw Data Synchronization for openBIS Research Repositories<\/strong>, Friedemann Ringwald, <em>Universit\u00e4ts Klinikum Heidelberg<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>14:20-14:45 <strong>openBIS and pyBIS in a data management pipeline<\/strong>, Dr Guanghao You, <em>NCCR Evolving Languages<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>14:45-15:10 <strong>Addressing Research Data Management Challenges in a Collaborative Material Science<\/strong> <strong>Project<\/strong>, Prof Ulrich Kerzel, <em>RWTH Aachen University<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>15:15-15:45 <strong>Coffee break<\/strong><\/p>\n<p>&nbsp;<\/p>\n<p>15:45-16:05 <strong>openBIS roadmap<\/strong>, Dr. Caterina Barillari, <em>ETHZ Scientific IT Services<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>16:05-17:15 <strong>Round table discussion<\/strong>, everyone<\/p>\n<p>&nbsp;<\/p>\n<p>18:30 <strong>Dinner in Zurich town center<\/strong><\/p>\n<p>&nbsp;<\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<h2><strong>Day 2: 13.09.2023<\/strong><\/h2>\n<p>On this day there will be 2 parallel workshops in the morning and 2 parallel workshops in the afternoon.<\/p>\n<p>Each workshop has a limited number of spaces that are available on a first come first served basis.<\/p>\n<p>&nbsp;<\/p>\n<h3><strong>09:00-12:30 Workshop 1: openBIS users training<\/strong><strong><br \/>\n<\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.1<\/h4>\n<p>&nbsp;<\/p>\n<p><em>25 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will provide a general overview of openBIS followed by a practical training session.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>Working with Inventory of lab materials.<\/li>\n<li>Working with Inventory of lab protocols.<\/li>\n<li>Lab notebook: Registration of experiments and data upload.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>This course is designed for beginners and does not require any previous knowledge about openBIS.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<li>Information on training material will be sent out to participants before the training.<\/li>\n<\/ul>\n<p><strong>\u00a0<\/strong><\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<h3><strong>09:00-12:30 Workshop 2: Integrating with other systems: the openBIS V3 Java API<\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.5<\/h4>\n<p>&nbsp;<\/p>\n<p><em>15 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will look at how to use the V3 Java API to integrate openBIS with other systems.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>openBIS V3 API philosophy.<\/li>\n<li>How to navigate the V3 API documentation.<\/li>\n<li>How to create V3 Java applications that can be used from other systems to integrate with openBIS. Create entities and search entities.<\/li>\n<\/ul>\n<p><strong>\u00a0<\/strong><\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>Java programming knowledge.<\/li>\n<li>Git installed.<\/li>\n<li>IntelliJ Community Edition IDE installed: https:\/\/www.jetbrains.com\/idea\/download\/.<\/li>\n<li>Java JDK 17 installed: <a href=\"https:\/\/adoptium.net\/en-GB\/temurin\/releases\/\">https:\/\/adoptium.net\/en-GB\/temurin\/releases\/<\/a>.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<p><strong>12:30-13:30 Lunch<\/strong><\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<h3><strong>13:30-17:00 Workshop 3: openBIS instance admins training <\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.1<\/h4>\n<p>&nbsp;<\/p>\n<p><em>25 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will provide a general overview of the openBIS admin functionalities followed by a practical training session.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>Registration of openBIS types.<\/li>\n<li>Customization of ELN Settings.<\/li>\n<li>Dynamic property plugins.<\/li>\n<li>Entity validation plugins.<\/li>\n<li>User management.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>This course is designed for openBIS Instance Admins.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<li>Information on training material will be sent out to participants before the training.<\/li>\n<\/ul>\n<p><strong>\u00a0<\/strong><\/p>\n<p>&nbsp;<\/p>\n<h3><strong>13:30-17:00 Workshop 4: automating data imports: the dropbox core plugin <\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.5<\/h4>\n<p>&nbsp;<\/p>\n<p><em>15 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will look at how to use the dropbox functionality of openBIS for data ingestion.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>How to create openBIS dropboxes.<\/li>\n<li>The dropbox lifecycle and rollback mechanism.<\/li>\n<li>Registering openBIS entities from dropbox.<\/li>\n<li>Use openBIS V3 API to search from dropbox.<\/li>\n<li>Upload data from dropbox.<\/li>\n<li>Parse files from dropbox.<\/li>\n<\/ul>\n<p><strong>\u00a0<\/strong><\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>Python 2.7 programming knowledge.<\/li>\n<li>Visual Studio Code.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<h2><strong>Day 3: 14.09.2023<\/strong><\/h2>\n<p>On this day there will be 1 workshop in the morning and 1 workshop in the afternoon.<\/p>\n<p>Each workshop has a limited number of spaces that are available on a first come first served basis.<\/p>\n<p>&nbsp;<\/p>\n<h3><strong>09:00-12:00 Workshop 5: working with openBIS using Python, JupyterHub and pyBIS <\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.1<\/h4>\n<p>&nbsp;<\/p>\n<p><em>15 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will look at how to work with pyBIS for users\u2019 and admins\u2019 functionalities.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>Connect to openBIS and browse through its content<\/li>\n<li>Create and modify openBIS master data and the ELN settings<\/li>\n<li>Search, create, update and delete Objects and Datasets<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>Python 3+ programming knowledge.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<p><strong>12:00-13:00 Lunch<\/strong><\/p>\n<p><strong>\u00a0<\/strong><\/p>\n<h3><strong>13:00-17:00 Workshop 6: developing your own openBIS webapps and extending the ELN-LIMS: the openBIS V3 Javascript API<\/strong><\/h3>\n<h4>Location: ETHZ HG building, Room E 33.1<\/h4>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><em>15 places available.<\/em><\/p>\n<p>&nbsp;<\/p>\n<p>In this workshop we will look at the V3 Javascript API for developing webapps.<\/p>\n<p>&nbsp;<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>How to use the Javascript API from a web application with provided examples.<\/li>\n<li>ELN Plugin system.<\/li>\n<li>How to use the AS service plugins to create custom APIs usable from web applications.<\/li>\n<\/ul>\n<p><strong>\u00a0<\/strong><\/p>\n<p>Requirements &amp; info:<\/p>\n<ul>\n<li>Own laptop.<\/li>\n<li>JavaScript programming knowledge.<\/li>\n<li>Visual Studio Code.<\/li>\n<li>A training server will be made available to participants on the day.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>We are pleased to announce the openBIS User Group Meeting 2023. &nbsp; Date: 12-14 September 2023. Location: HG building, ETH Zurich. R\u00e4mistrasse 101, 8092 Z\u00fcrich. Google Maps &nbsp; &nbsp; Registration Registration for the event is now closed. &nbsp; Registration fees 3-days attendance: 100CHF 2-days attendance:&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3829","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/3829","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/comments?post=3829"}],"version-history":[{"count":11,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/3829\/revisions"}],"predecessor-version":[{"id":4206,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/3829\/revisions\/4206"}],"wp:attachment":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/media?parent=3829"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}