{"id":2484,"date":"2021-08-03T07:25:29","date_gmt":"2021-08-03T07:25:29","guid":{"rendered":"https:\/\/openbis.ch\/?page_id=2484"},"modified":"2021-09-22T12:41:34","modified_gmt":"2021-09-22T12:41:34","slug":"openbis-user-group-meeting-2021","status":"publish","type":"page","link":"https:\/\/openbis.ch\/index.php\/openbis-user-group-meeting-2021\/","title":{"rendered":"openBIS User Group Meeting 2021"},"content":{"rendered":"<div class=\"wpb-content-wrapper\"><p>[vc_row css_animation=&#8221;&#8221; row_type=&#8221;row&#8221; use_row_as_full_screen_section=&#8221;no&#8221; type=&#8221;full_width&#8221; angled_section=&#8221;no&#8221; text_align=&#8221;left&#8221; background_image_as_pattern=&#8221;without_pattern&#8221;][vc_column][vc_column_text]<\/p>\n<h3 style=\"text-align: center;\"><span style=\"color: #000000;\">We are pleased to announce the <strong>openBIS User Group Meeting 2021<\/strong>, which will take place <strong>from 27th till 30th of September 2021<\/strong>.<\/span><\/h3>\n<p>[\/vc_column_text][vc_empty_space][vc_column_text]<\/p>\n<h1 style=\"text-align: left;\"><span style=\"color: #333399;\">Location<\/span><\/h1>\n<p>&nbsp;<\/p>\n<p>Online. Zoom links for the workshop sessions will be sent to registered participants a few days before the event.<\/p>\n<p>[\/vc_column_text][vc_empty_space][vc_column_text]<\/p>\n<h1><span style=\"color: #333399;\"><strong>Registration<\/strong><\/span><\/h1>\n<p>&nbsp;<\/p>\n<p>Registration for the different sessions is now open.<\/p>\n<p>The first day of the meeting is open to anyone who wants to join, but registration is mandatory. There is no registration deadline for the first day.<\/p>\n<p>&nbsp;<\/p>\n<p>The workshops have limited places available. Place allocation is on a first-come, first-served basis.<\/p>\n<p><span style=\"color: #ff0000;\"><strong>Deadline for all workshops registrations<\/strong>:<\/span> <span style=\"color: #000000;\"><strong>20.09.2021<\/strong><\/span><\/p>\n<p>[\/vc_column_text][vc_empty_space][vc_column_text]<\/p>\n<h1><span style=\"color: #333399;\"><strong>Cancellations<\/strong><\/span><\/h1>\n<p>&nbsp;<\/p>\n<p>If you register for a workshop but are no longer able to attend, we would be grateful if you could inform us in advance, as soon as possible:\u00a0<a href=\"sis.helpdesk@ethz.ch\">sis.helpdesk@ethz.ch<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>This would allow us to give someone else the opportunity to join.<\/p>\n<p>&nbsp;<\/p>\n<p>[\/vc_column_text][vc_empty_space][vc_column_text]<\/p>\n<h1><span style=\"color: #333399;\"><strong>Program<\/strong><\/span><\/h1>\n<p>&nbsp;<\/p>\n<h2><span style=\"color: #000080;\"><b>27.09.2021<\/b><\/span><\/h2>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>:\u00a0<a href=\"https:\/\/ethz.zoom.us\/meeting\/register\/u5MqfuGurDIpGdzqRM3hAJDBtZNX4DATwihg\" target=\"_blank\" rel=\"noopener noreferrer\">Zoom link registration<\/a><\/p>\n<p>&nbsp;<\/p>\n<h3>09:00-09:45 <em>Welcome from SIS. Overview of latest developments and roadmap<\/em>. Bernd Rinn, Caterina Barillari, SIS ETH Zurich<\/h3>\n<p>&nbsp;<\/p>\n<h3>09:45- 10:15 <em>Integrating imaging and omics data for biomedical research<\/em>, Sven Nahnsen, <em>QBiC T\u00fcbingen<\/em><\/h3>\n<p>&nbsp;<\/p>\n<h3>10:15-10:45 <em>Secure handling of confidential data<\/em>, Diana Coman Schmid, <em>SIS ETH Zurich<\/em><\/h3>\n<p>&nbsp;<\/p>\n<h3><\/h3>\n<h3><\/h3>\n<h3>10:45-11:00 coffee break<\/h3>\n<p>&nbsp;<\/p>\n<h3>11:00-11:15 <em>Structuring your research with openBIS<\/em>, Tatiana Kochetkova, <em>Empa<\/em><\/h3>\n<p>&nbsp;<\/p>\n<h3>11:15-11:30 <em>To the Data management and beyond: example of lab workflow in OpenBIS,<\/em> Nikolajs Toropovs, <em>Empa<\/em><\/h3>\n<p>&nbsp;<\/p>\n<h3>11:30-12:00 <em><b><span lang=\"EN-US\">Digitalization of Sequencing Lab Workflows with OpenBIS LIMS<\/span><\/b><\/em>, Martin Hediger, <em>University Hospital Z\u00fcrich<\/em><\/h3>\n<p>&nbsp;<\/p>\n<h3><\/h3>\n<h3>12:00-12:15 wrap up<\/h3>\n<p>&nbsp;<\/p>\n<h3><\/h3>\n<h3>12:15-14:00 lunch break<\/h3>\n<p>&nbsp;<\/p>\n<h3>14:00-16:00 round table discussion<\/h3>\n<p>[\/vc_column_text][vc_empty_space][vc_separator type=&#8221;normal&#8221; color=&#8221;#000000&#8243;][vc_empty_space][vc_column_text]<\/p>\n<h2><span style=\"color: #000080;\"><b>28.09.2021<\/b><\/span><\/h2>\n<p>&nbsp;<\/p>\n<p>The trainings on this day do not require any previous openBIS knowledge.<\/p>\n<p>&nbsp;<\/p>\n<h3><strong>09:00-12:30 ELN user training<\/strong><\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>:\u00a0<a href=\"https:\/\/forms.gle\/KwBRZz7QfxYBWsPk8\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/qTTKkGtGKffimpAV7<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>In this course we will provide a general overview of openBIS ELN\/LIMS followed by a practical training session.<\/p>\n<p>Topics covered:<\/p>\n<ul>\n<li>Working with Inventory of lab materials.<\/li>\n<li>Working with Inventory of lab protocols.<\/li>\n<li>Lab notebook: Registration of experiments and data upload.<\/li>\n<\/ul>\n<p>This course is designed for beginners and does not require any previous knowledge.<\/p>\n<p>A training server will be made available to participants on the day. Information on training material will be sent out to participants before the training.<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 25<\/span><\/p>\n<p>&nbsp;<\/p>\n<h3><strong>12:30-13:30 lunch break<\/strong><\/h3>\n<p>&nbsp;<\/p>\n<h3><strong>13:30-16:30 Instance admin training<\/strong><\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/KrNz3jwNfEd97fsB8\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/KrNz3jwNfEd97fsB8\u00a0<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>In this course we will provide a general overview of the openBIS admin functionalities followed by a practical training session.<\/p>\n<p>Topics covered:<\/p>\n<p>Registration of openBIS types.<\/p>\n<ul>\n<li>Overview of openBIS property types.<\/li>\n<li>Customization of ELN Settings.<\/li>\n<li>Dynamic property plugins.<\/li>\n<li>Entity validation plugins.<\/li>\n<li>User management.<\/li>\n<\/ul>\n<p>This course is designed for openBIS Instance Admins.<\/p>\n<p>A training server will be made available to participants on the day. Information on training material will be sent out to participants before the training.<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span><\/p>\n<h2><\/h2>\n<p>[\/vc_column_text][vc_empty_space][vc_separator type=&#8221;normal&#8221; color=&#8221;#000000&#8243;][vc_empty_space][vc_column_text]<\/p>\n<h2><span style=\"color: #000080;\"><b>29.09.2021<\/b><\/span><\/h2>\n<p>&nbsp;<\/p>\n<p>The workshops on this day require familiarity with openBIS and programming.<\/p>\n<p>&nbsp;<\/p>\n<h3>09:00-09:30 Introduction to development workshops &#8211; openBIS Integrations Overview<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/qj8rkw4m2AZxiu14A\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/qj8rkw4m2AZxiu14A<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>During this introduction we will explain how openBIS integrations for labs are done, with all the moving parts and openBIS extensions involved.<\/p>\n<p>&nbsp;<\/p>\n<h3><\/h3>\n<h3>09:30-11:30 &#8211; Workshop 1 &#8211; Creating and Importing openBIS Data Models with Excel : The Excel Master Data Core Plugin<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/Y296VVdYBptpNhk87\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/Y296VVdYBptpNhk87<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>Topics:<\/p>\n<ul>\n<li>How to create data models for openBIS using the XLS master data plugin.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span><\/p>\n<h3><\/h3>\n<p>&nbsp;<\/p>\n<h3>11:30-13:00 lunch break<\/h3>\n<p>&nbsp;<\/p>\n<h3>13:00-15:00 Workshop 2 &#8211; Automating data imports : The Dropbox Core plugin<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/GfLGGWeqFNnauXWp8\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/GfLGGWeqFNnauXWp8<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>Topics:<\/p>\n<ul>\n<li>How to create dropboxes.<\/li>\n<li>The dropbox lifecycle and rollback mechanism.<\/li>\n<li>Registering\u00a0openBIS entities from dropbox.<\/li>\n<li>Use openBIS V3 API for search from dropbox.<\/li>\n<li>Upload data from dropbox.<\/li>\n<li>Parse files from dropbox.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span><\/p>\n<p>&nbsp;<\/p>\n<h3>15:00-15:30 Coffee break<\/h3>\n<p>&nbsp;<\/p>\n<h3>15:30-17:30 Workshop 3 &#8211; Integrating with other systems : The openBIS V3 Java API<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/QRgisqkd7JnYmbGw7\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/QRgisqkd7JnYmbGw7<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>Topics:<\/p>\n<ul>\n<li>openBIS V3 API Philosophy.<\/li>\n<li>How to navigate the V3 API Documentation.<\/li>\n<li>How to create V3 Java applications that can be used from other systems to integrate with openBIS. Create entities and search entities.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span>[\/vc_column_text][vc_empty_space][vc_separator type=&#8221;normal&#8221; color=&#8221;#000000&#8243;][vc_empty_space][vc_column_text]<\/p>\n<h2><span style=\"color: #000080;\"><b>30.09.2021<\/b><\/span><\/h2>\n<p>&nbsp;<\/p>\n<p>The workshops on this day require familiarity with openBIS and programming.<\/p>\n<p>&nbsp;<\/p>\n<h3>09:00-11:00 &#8211; Workshop 4 &#8211; Developing your own openBIS Web apps and extending ELN-LIMS : The openBIS V3 Javascript API<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/f4XpitGWYunVy8Jg8\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/f4XpitGWYunVy8Jg8<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>Topics:<\/p>\n<ul>\n<li>How to use the Javascript API from a web application with provided examples.<\/li>\n<li>ELN Plugin system.<\/li>\n<li>How to use the AS service plugins to create custom APIs usable from web applications.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span><\/p>\n<p>&nbsp;<\/p>\n<h3>11:00-11:15\u00a0 Coffee break<\/h3>\n<p>&nbsp;<\/p>\n<h3>11:15-13:15 &#8211; Workshop 5 &#8211; Working with openBIS using\u00a0Python, Jupyter Lab and pyBIS<\/h3>\n<p>&nbsp;<\/p>\n<p><strong>Registration<\/strong>: <a href=\"https:\/\/forms.gle\/PmtfnERQAizYHwsY9\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/forms.gle\/PmtfnERQAizYHwsY9<\/a><\/p>\n<p>&nbsp;<\/p>\n<p>Topics:<\/p>\n<ul>\n<li>connect to openBIS and browse through its content<\/li>\n<li>search, create, update and delete Samples and DataSets<\/li>\n<li>create and modify openBIS master data and ELN-LIMS settings<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><span style=\"color: #ff0000;\">Max number of places: 15<\/span>[\/vc_column_text][vc_empty_space][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"<p>[vc_row css_animation=&#8221;&#8221; row_type=&#8221;row&#8221; use_row_as_full_screen_section=&#8221;no&#8221; type=&#8221;full_width&#8221; angled_section=&#8221;no&#8221; text_align=&#8221;left&#8221; background_image_as_pattern=&#8221;without_pattern&#8221;][vc_column][vc_column_text] We are pleased to announce the openBIS User Group Meeting 2021, which will take place from 27th till 30th of September 2021. [\/vc_column_text][vc_empty_space][vc_column_text] Location &nbsp; Online. Zoom links for the workshop sessions will be sent to registered&#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-2484","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/2484","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/comments?post=2484"}],"version-history":[{"count":34,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/2484\/revisions"}],"predecessor-version":[{"id":2646,"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/pages\/2484\/revisions\/2646"}],"wp:attachment":[{"href":"https:\/\/openbis.ch\/index.php\/wp-json\/wp\/v2\/media?parent=2484"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}